Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1299

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1297 and Dshi_1298 are separated by 24 nucleotidesDshi_1298 and Dshi_1299 are separated by 74 nucleotidesDshi_1299 and Dshi_1300 are separated by 143 nucleotides Dshi_1297: Dshi_1297 - acyl-CoA dehydrogenase domain protein (RefSeq), at 1,351,256 to 1,352,419 _1297 Dshi_1298: Dshi_1298 - hypothetical protein (RefSeq), at 1,352,444 to 1,352,782 _1298 Dshi_1299: Dshi_1299 - OmpW family protein (RefSeq), at 1,352,857 to 1,353,465 _1299 Dshi_1300: Dshi_1300 - Propionyl-CoA carboxylase (RefSeq), at 1,353,609 to 1,355,213 _1300 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1351.996 kb on - strand, within Dshi_1297at 1352.049 kb on + strand, within Dshi_1297at 1352.116 kb on + strand, within Dshi_1297at 1352.158 kb on + strand, within Dshi_1297at 1352.223 kb on + strand, within Dshi_1297at 1352.250 kb on + strand, within Dshi_1297at 1352.273 kb on + strand, within Dshi_1297at 1352.278 kb on + strand, within Dshi_1297at 1352.334 kb on - strandat 1352.399 kb on - strandat 1352.511 kb on + strand, within Dshi_1298at 1352.599 kb on + strand, within Dshi_1298at 1352.616 kb on + strand, within Dshi_1298at 1352.621 kb on - strand, within Dshi_1298at 1352.828 kb on + strandat 1352.829 kb on + strandat 1352.855 kb on + strandat 1352.862 kb on - strandat 1352.884 kb on - strandat 1353.095 kb on - strand, within Dshi_1299at 1353.119 kb on + strand, within Dshi_1299at 1353.119 kb on + strand, within Dshi_1299at 1353.369 kb on - strand, within Dshi_1299at 1353.424 kb on - strandat 1353.674 kb on - strandat 1353.917 kb on + strand, within Dshi_1300at 1353.952 kb on + strand, within Dshi_1300at 1354.101 kb on + strand, within Dshi_1300at 1354.172 kb on + strand, within Dshi_1300at 1354.188 kb on - strand, within Dshi_1300at 1354.299 kb on - strand, within Dshi_1300at 1354.322 kb on - strand, within Dshi_1300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,351,996 - Dshi_1297 0.64 +0.8
1,352,049 + Dshi_1297 0.68 -0.9
1,352,116 + Dshi_1297 0.74 -3.9
1,352,158 + Dshi_1297 0.77 +0.1
1,352,223 + Dshi_1297 0.83 +0.8
1,352,250 + Dshi_1297 0.85 -2.0
1,352,273 + Dshi_1297 0.87 +1.4
1,352,278 + Dshi_1297 0.88 -0.7
1,352,334 - -0.9
1,352,399 - -0.4
1,352,511 + Dshi_1298 0.20 -0.8
1,352,599 + Dshi_1298 0.46 +0.8
1,352,616 + Dshi_1298 0.51 +1.0
1,352,621 - Dshi_1298 0.52 -1.8
1,352,828 + +0.4
1,352,829 + -0.9
1,352,855 + +3.0
1,352,862 - +1.7
1,352,884 - -4.2
1,353,095 - Dshi_1299 0.39 +0.1
1,353,119 + Dshi_1299 0.43 -3.5
1,353,119 + Dshi_1299 0.43 -2.1
1,353,369 - Dshi_1299 0.84 +2.1
1,353,424 - -4.2
1,353,674 - -1.1
1,353,917 + Dshi_1300 0.19 -0.9
1,353,952 + Dshi_1300 0.21 -0.9
1,354,101 + Dshi_1300 0.31 -0.2
1,354,172 + Dshi_1300 0.35 -2.0
1,354,188 - Dshi_1300 0.36 -0.1
1,354,299 - Dshi_1300 0.43 +1.7
1,354,322 - Dshi_1300 0.44 -1.3

Or see this region's nucleotide sequence