Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1295

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1294 and Dshi_1295 are separated by 127 nucleotidesDshi_1295 and Dshi_1296 are separated by 50 nucleotides Dshi_1294: Dshi_1294 - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (RefSeq), at 1,347,674 to 1,349,026 _1294 Dshi_1295: Dshi_1295 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 1,349,154 to 1,349,828 _1295 Dshi_1296: Dshi_1296 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 1,349,879 to 1,351,090 _1296 Position (kb) 1349 1350Strain fitness (log2 ratio) -3 -2 -1 0 1at 1349.178 kb on - strandat 1349.211 kb on - strandat 1349.226 kb on - strand, within Dshi_1295at 1349.291 kb on + strand, within Dshi_1295at 1349.342 kb on + strand, within Dshi_1295at 1349.358 kb on + strand, within Dshi_1295at 1349.369 kb on + strand, within Dshi_1295at 1349.530 kb on + strand, within Dshi_1295at 1349.543 kb on - strand, within Dshi_1295at 1349.599 kb on - strand, within Dshi_1295at 1349.635 kb on - strand, within Dshi_1295at 1349.712 kb on + strand, within Dshi_1295at 1349.845 kb on + strandat 1349.913 kb on + strandat 1350.058 kb on + strand, within Dshi_1296at 1350.392 kb on - strand, within Dshi_1296at 1350.540 kb on + strand, within Dshi_1296at 1350.713 kb on + strand, within Dshi_1296at 1350.713 kb on + strand, within Dshi_1296

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,349,178 - -0.5
1,349,211 - -2.5
1,349,226 - Dshi_1295 0.11 -1.2
1,349,291 + Dshi_1295 0.20 +0.1
1,349,342 + Dshi_1295 0.28 -0.5
1,349,358 + Dshi_1295 0.30 -3.6
1,349,369 + Dshi_1295 0.32 -1.6
1,349,530 + Dshi_1295 0.56 -2.2
1,349,543 - Dshi_1295 0.58 -0.2
1,349,599 - Dshi_1295 0.66 +0.1
1,349,635 - Dshi_1295 0.71 -1.5
1,349,712 + Dshi_1295 0.83 +0.1
1,349,845 + -0.9
1,349,913 + -2.5
1,350,058 + Dshi_1296 0.15 -2.9
1,350,392 - Dshi_1296 0.42 +0.1
1,350,540 + Dshi_1296 0.55 -0.3
1,350,713 + Dshi_1296 0.69 -2.7
1,350,713 + Dshi_1296 0.69 +1.4

Or see this region's nucleotide sequence