Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1248 and Dshi_1249 are separated by 141 nucleotides Dshi_1249 and Dshi_1250 are separated by 15 nucleotides
Dshi_1248: Dshi_1248 - extracellular solute-binding protein family 1 (RefSeq), at 1,295,236 to 1,296,480
_1248
Dshi_1249: Dshi_1249 - transcriptional regulator, IclR family (RefSeq), at 1,296,622 to 1,297,437
_1249
Dshi_1250: Dshi_1250 - ABC transporter related (RefSeq), at 1,297,453 to 1,298,508
_1250
Position (kb)
1296
1297
1298 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1295.660 kb on - strand, within Dshi_1248 at 1295.814 kb on - strand, within Dshi_1248 at 1295.837 kb on + strand, within Dshi_1248 at 1295.843 kb on + strand, within Dshi_1248 at 1296.009 kb on + strand, within Dshi_1248 at 1296.015 kb on + strand, within Dshi_1248 at 1296.017 kb on - strand, within Dshi_1248 at 1296.061 kb on - strand, within Dshi_1248 at 1296.075 kb on - strand, within Dshi_1248 at 1296.080 kb on + strand, within Dshi_1248 at 1296.101 kb on + strand, within Dshi_1248 at 1296.146 kb on + strand, within Dshi_1248 at 1296.190 kb on + strand, within Dshi_1248 at 1296.217 kb on - strand, within Dshi_1248 at 1296.225 kb on + strand, within Dshi_1248 at 1296.227 kb on + strand, within Dshi_1248 at 1296.413 kb on - strand at 1296.431 kb on - strand at 1296.437 kb on + strand at 1296.440 kb on - strand at 1296.504 kb on - strand at 1296.542 kb on + strand at 1296.571 kb on - strand at 1296.605 kb on + strand at 1296.613 kb on - strand at 1296.771 kb on - strand, within Dshi_1249 at 1296.854 kb on - strand, within Dshi_1249 at 1296.986 kb on - strand, within Dshi_1249 at 1297.048 kb on - strand, within Dshi_1249 at 1297.134 kb on + strand, within Dshi_1249 at 1297.188 kb on + strand, within Dshi_1249 at 1297.474 kb on - strand at 1297.527 kb on + strand at 1297.743 kb on - strand, within Dshi_1250 at 1297.744 kb on - strand, within Dshi_1250 at 1297.755 kb on + strand, within Dshi_1250 at 1297.850 kb on - strand, within Dshi_1250 at 1297.904 kb on + strand, within Dshi_1250 at 1297.904 kb on + strand, within Dshi_1250 at 1297.904 kb on + strand, within Dshi_1250 at 1298.016 kb on - strand, within Dshi_1250 at 1298.032 kb on - strand, within Dshi_1250 at 1298.061 kb on + strand, within Dshi_1250 at 1298.120 kb on - strand, within Dshi_1250 at 1298.252 kb on + strand, within Dshi_1250 at 1298.275 kb on - strand, within Dshi_1250 at 1298.316 kb on + strand, within Dshi_1250 at 1298.345 kb on - strand, within Dshi_1250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 1,295,660 - Dshi_1248 0.34 -0.5 1,295,814 - Dshi_1248 0.46 +0.2 1,295,837 + Dshi_1248 0.48 -0.8 1,295,843 + Dshi_1248 0.49 -2.0 1,296,009 + Dshi_1248 0.62 -0.5 1,296,015 + Dshi_1248 0.63 -0.9 1,296,017 - Dshi_1248 0.63 +0.2 1,296,061 - Dshi_1248 0.66 -0.5 1,296,075 - Dshi_1248 0.67 -1.4 1,296,080 + Dshi_1248 0.68 +4.4 1,296,101 + Dshi_1248 0.69 -0.6 1,296,146 + Dshi_1248 0.73 -0.8 1,296,190 + Dshi_1248 0.77 -0.1 1,296,217 - Dshi_1248 0.79 +0.8 1,296,225 + Dshi_1248 0.79 +0.7 1,296,227 + Dshi_1248 0.80 -0.8 1,296,413 - +1.3 1,296,431 - -0.5 1,296,437 + -1.7 1,296,440 - -0.6 1,296,504 - -0.1 1,296,542 + -0.6 1,296,571 - -2.2 1,296,605 + +2.0 1,296,613 - -1.2 1,296,771 - Dshi_1249 0.18 -0.6 1,296,854 - Dshi_1249 0.28 +0.5 1,296,986 - Dshi_1249 0.45 +0.9 1,297,048 - Dshi_1249 0.52 +0.6 1,297,134 + Dshi_1249 0.63 +1.1 1,297,188 + Dshi_1249 0.69 -0.5 1,297,474 - -0.3 1,297,527 + +0.0 1,297,743 - Dshi_1250 0.27 -0.5 1,297,744 - Dshi_1250 0.28 -0.8 1,297,755 + Dshi_1250 0.29 -0.2 1,297,850 - Dshi_1250 0.38 -0.5 1,297,904 + Dshi_1250 0.43 -2.5 1,297,904 + Dshi_1250 0.43 -0.1 1,297,904 + Dshi_1250 0.43 -0.5 1,298,016 - Dshi_1250 0.53 -1.4 1,298,032 - Dshi_1250 0.55 +1.1 1,298,061 + Dshi_1250 0.58 -0.6 1,298,120 - Dshi_1250 0.63 +1.5 1,298,252 + Dshi_1250 0.76 +0.6 1,298,275 - Dshi_1250 0.78 +1.1 1,298,316 + Dshi_1250 0.82 -1.1 1,298,345 - Dshi_1250 0.84 -0.9
Or see this region's nucleotide sequence