Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1065

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1063 and Dshi_1064 overlap by 8 nucleotidesDshi_1064 and Dshi_1065 are separated by 379 nucleotidesDshi_1065 and Dshi_1066 are separated by 81 nucleotidesDshi_1066 and Dshi_1067 are separated by 278 nucleotides Dshi_1063: Dshi_1063 - protein of unknown function DUF1289 (RefSeq), at 1,097,007 to 1,097,243 _1063 Dshi_1064: Dshi_1064 - Holliday junction resolvase YqgF (RefSeq), at 1,097,236 to 1,097,727 _1064 Dshi_1065: Dshi_1065 - hypothetical protein (RefSeq), at 1,098,107 to 1,098,376 _1065 Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886 _1066 Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764 _1067 Position (kb) 1098 1099Strain fitness (log2 ratio) -2 -1 0 1 2at 1097.190 kb on + strand, within Dshi_1063at 1097.193 kb on - strand, within Dshi_1063at 1097.231 kb on + strandat 1097.231 kb on - strandat 1097.822 kb on - strandat 1097.896 kb on + strandat 1097.913 kb on - strandat 1098.012 kb on + strandat 1098.014 kb on + strandat 1098.091 kb on + strandat 1098.096 kb on - strandat 1098.098 kb on - strandat 1098.123 kb on + strandat 1098.133 kb on + strandat 1098.141 kb on - strand, within Dshi_1065at 1098.194 kb on + strand, within Dshi_1065at 1098.247 kb on - strand, within Dshi_1065at 1098.350 kb on + strandat 1098.500 kb on + strandat 1098.540 kb on + strand, within Dshi_1066at 1098.548 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.605 kb on - strand, within Dshi_1066at 1098.656 kb on + strand, within Dshi_1066at 1098.912 kb on + strandat 1098.978 kb on - strandat 1099.081 kb on + strandat 1099.138 kb on + strandat 1099.149 kb on + strandat 1099.260 kb on + strand, within Dshi_1067

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,097,190 + Dshi_1063 0.77 -2.5
1,097,193 - Dshi_1063 0.78 +0.1
1,097,231 + +0.1
1,097,231 - -0.9
1,097,822 - +2.4
1,097,896 + -1.0
1,097,913 - -0.9
1,098,012 + +0.1
1,098,014 + -2.7
1,098,091 + -1.9
1,098,096 - -0.9
1,098,098 - +0.3
1,098,123 + +0.1
1,098,133 + +0.1
1,098,141 - Dshi_1065 0.13 -2.7
1,098,194 + Dshi_1065 0.32 +2.7
1,098,247 - Dshi_1065 0.52 +1.4
1,098,350 + -1.0
1,098,500 + -1.4
1,098,540 + Dshi_1066 0.19 +1.7
1,098,548 - Dshi_1066 0.21 -2.5
1,098,563 - Dshi_1066 0.24 -1.5
1,098,563 - Dshi_1066 0.24 -1.5
1,098,605 - Dshi_1066 0.34 -1.2
1,098,656 + Dshi_1066 0.46 -2.1
1,098,912 + -0.3
1,098,978 - -0.3
1,099,081 + -2.0
1,099,138 + -2.5
1,099,149 + -0.8
1,099,260 + Dshi_1067 0.16 +0.1

Or see this region's nucleotide sequence