Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1060

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1059 and Dshi_1060 are separated by 16 nucleotidesDshi_1060 and Dshi_1061 are separated by 171 nucleotides Dshi_1059: Dshi_1059 - hypothetical protein (RefSeq), at 1,093,034 to 1,094,338 _1059 Dshi_1060: Dshi_1060 - hypothetical protein (RefSeq), at 1,094,355 to 1,095,233 _1060 Dshi_1061: Dshi_1061 - hypothetical protein (RefSeq), at 1,095,405 to 1,096,250 _1061 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1093.377 kb on - strand, within Dshi_1059at 1093.403 kb on - strand, within Dshi_1059at 1093.411 kb on + strand, within Dshi_1059at 1093.471 kb on - strand, within Dshi_1059at 1093.539 kb on - strand, within Dshi_1059at 1093.539 kb on - strand, within Dshi_1059at 1093.822 kb on - strand, within Dshi_1059at 1093.845 kb on + strand, within Dshi_1059at 1093.891 kb on - strand, within Dshi_1059at 1093.908 kb on - strand, within Dshi_1059at 1093.988 kb on - strand, within Dshi_1059at 1094.000 kb on - strand, within Dshi_1059at 1094.271 kb on + strandat 1094.505 kb on + strand, within Dshi_1060at 1094.667 kb on - strand, within Dshi_1060at 1094.708 kb on - strand, within Dshi_1060at 1095.034 kb on - strand, within Dshi_1060at 1095.039 kb on + strand, within Dshi_1060at 1095.076 kb on + strand, within Dshi_1060at 1095.084 kb on - strand, within Dshi_1060at 1095.095 kb on + strand, within Dshi_1060at 1095.103 kb on - strand, within Dshi_1060at 1095.215 kb on + strandat 1095.249 kb on - strandat 1095.267 kb on - strandat 1095.403 kb on + strandat 1095.457 kb on + strandat 1095.490 kb on + strand, within Dshi_1061at 1095.984 kb on + strand, within Dshi_1061at 1096.083 kb on + strand, within Dshi_1061at 1096.140 kb on - strand, within Dshi_1061at 1096.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,093,377 - Dshi_1059 0.26 -0.6
1,093,403 - Dshi_1059 0.28 +0.3
1,093,411 + Dshi_1059 0.29 -3.2
1,093,471 - Dshi_1059 0.33 +2.1
1,093,539 - Dshi_1059 0.39 -1.1
1,093,539 - Dshi_1059 0.39 -0.9
1,093,822 - Dshi_1059 0.60 -0.5
1,093,845 + Dshi_1059 0.62 -1.5
1,093,891 - Dshi_1059 0.66 +3.1
1,093,908 - Dshi_1059 0.67 -0.9
1,093,988 - Dshi_1059 0.73 -0.9
1,094,000 - Dshi_1059 0.74 +0.1
1,094,271 + +0.1
1,094,505 + Dshi_1060 0.17 -2.0
1,094,667 - Dshi_1060 0.35 +2.4
1,094,708 - Dshi_1060 0.40 +0.3
1,095,034 - Dshi_1060 0.77 +2.1
1,095,039 + Dshi_1060 0.78 -1.5
1,095,076 + Dshi_1060 0.82 -0.6
1,095,084 - Dshi_1060 0.83 -2.2
1,095,095 + Dshi_1060 0.84 -2.5
1,095,103 - Dshi_1060 0.85 +2.4
1,095,215 + -0.1
1,095,249 - +1.7
1,095,267 - -0.1
1,095,403 + -0.9
1,095,457 + -1.2
1,095,490 + Dshi_1061 0.10 -1.5
1,095,984 + Dshi_1061 0.68 -2.2
1,096,083 + Dshi_1061 0.80 -0.9
1,096,140 - Dshi_1061 0.87 -2.0
1,096,190 - +0.1

Or see this region's nucleotide sequence