Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_R0019

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0779 and Dshi_R0019 are separated by 75 nucleotidesDshi_R0019 and Dshi_0780 are separated by 18 nucleotidesDshi_0780 and Dshi_0781 are separated by 4 nucleotides Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522 _0779 Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674 _R0019 Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637 _0780 Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929 _0781 Position (kb) 785 786Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 784.882 kb on - strand, within Dshi_0779at 785.031 kb on - strand, within Dshi_0779at 785.234 kb on - strand, within Dshi_0779at 785.288 kb on - strand, within Dshi_0779at 785.330 kb on - strand, within Dshi_0779at 785.477 kb on - strandat 785.891 kb on + strand, within Dshi_0780at 785.896 kb on + strand, within Dshi_0780at 785.899 kb on - strand, within Dshi_0780at 785.899 kb on - strand, within Dshi_0780at 785.901 kb on + strand, within Dshi_0780at 785.904 kb on - strand, within Dshi_0780at 785.909 kb on - strand, within Dshi_0780at 785.957 kb on - strand, within Dshi_0780at 785.999 kb on - strand, within Dshi_0780at 786.014 kb on - strand, within Dshi_0780at 786.041 kb on - strandat 786.084 kb on - strand, within Dshi_0780at 786.180 kb on + strand, within Dshi_0780at 786.180 kb on + strand, within Dshi_0780at 786.192 kb on + strand, within Dshi_0780at 786.194 kb on + strand, within Dshi_0780at 786.198 kb on - strand, within Dshi_0780at 786.274 kb on + strand, within Dshi_0780at 786.362 kb on + strand, within Dshi_0780at 786.370 kb on - strand, within Dshi_0780at 786.406 kb on - strand, within Dshi_0780at 786.523 kb on - strand, within Dshi_0780at 786.600 kb on + strandat 786.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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784,882 - Dshi_0779 0.33 -0.7
785,031 - Dshi_0779 0.49 -3.3
785,234 - Dshi_0779 0.70 +0.3
785,288 - Dshi_0779 0.75 -2.3
785,330 - Dshi_0779 0.80 -1.4
785,477 - -1.7
785,891 + Dshi_0780 0.21 -1.3
785,896 + Dshi_0780 0.21 -2.0
785,899 - Dshi_0780 0.22 -1.0
785,899 - Dshi_0780 0.22 -3.9
785,901 + Dshi_0780 0.22 -1.1
785,904 - Dshi_0780 0.22 +0.5
785,909 - Dshi_0780 0.23 +0.8
785,957 - Dshi_0780 0.28 -1.7
785,999 - Dshi_0780 0.32 -0.7
786,014 - Dshi_0780 0.34 +1.3
786,041 - +0.3
786,084 - Dshi_0780 0.41 +0.3
786,180 + Dshi_0780 0.52 +0.3
786,180 + Dshi_0780 0.52 +0.7
786,192 + Dshi_0780 0.53 +0.1
786,194 + Dshi_0780 0.53 -0.6
786,198 - Dshi_0780 0.53 -1.3
786,274 + Dshi_0780 0.61 +0.6
786,362 + Dshi_0780 0.71 +3.1
786,370 - Dshi_0780 0.72 -0.4
786,406 - Dshi_0780 0.75 +2.9
786,523 - Dshi_0780 0.88 +0.3
786,600 + +0.3
786,621 + -3.6

Or see this region's nucleotide sequence