Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0671 and Dshi_0672 are separated by 30 nucleotides Dshi_0672 and Dshi_0673 overlap by 20 nucleotides Dshi_0673 and Dshi_0674 are separated by 59 nucleotides
Dshi_0671: Dshi_0671 - methyltransferase small (RefSeq), at 676,410 to 677,411
_0671
Dshi_0672: Dshi_0672 - short-chain dehydrogenase/reductase SDR (RefSeq), at 677,442 to 678,248
_0672
Dshi_0673: Dshi_0673 - hypothetical protein (RefSeq), at 678,229 to 678,606
_0673
Dshi_0674: Dshi_0674 - Coproporphyrinogen oxidase (RefSeq), at 678,666 to 679,559
_0674
Position (kb) 677
678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.457 kb on - strand at 676.468 kb on + strand at 676.484 kb on + strand at 676.645 kb on - strand, within Dshi_0671 at 676.832 kb on + strand, within Dshi_0671 at 676.869 kb on + strand, within Dshi_0671 at 677.020 kb on + strand, within Dshi_0671 at 677.176 kb on - strand, within Dshi_0671 at 677.262 kb on - strand, within Dshi_0671 at 677.272 kb on - strand, within Dshi_0671 at 677.298 kb on + strand, within Dshi_0671 at 677.313 kb on - strand at 677.333 kb on + strand at 677.341 kb on - strand at 677.425 kb on - strand at 678.391 kb on - strand, within Dshi_0673 at 678.434 kb on - strand, within Dshi_0673 at 678.442 kb on + strand, within Dshi_0673 at 678.463 kb on + strand, within Dshi_0673
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 676,457 - -1.5 676,468 + +2.4 676,484 + -0.6 676,645 - Dshi_0671 0.23 -1.6 676,832 + Dshi_0671 0.42 -1.9 676,869 + Dshi_0671 0.46 -0.9 677,020 + Dshi_0671 0.61 -2.5 677,176 - Dshi_0671 0.76 -2.5 677,262 - Dshi_0671 0.85 +0.8 677,272 - Dshi_0671 0.86 -0.7 677,298 + Dshi_0671 0.89 -0.6 677,313 - +0.9 677,333 + -2.2 677,341 - +0.1 677,425 - -1.9 678,391 - Dshi_0673 0.43 -0.1 678,434 - Dshi_0673 0.54 -0.6 678,442 + Dshi_0673 0.56 -3.3 678,463 + Dshi_0673 0.62 -1.5
Or see this region's nucleotide sequence