Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0538

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0537 and Dshi_0538 are separated by 185 nucleotidesDshi_0538 and Dshi_0539 are separated by 13 nucleotides Dshi_0537: Dshi_0537 - carbohydrate kinase FGGY (RefSeq), at 522,165 to 523,658 _0537 Dshi_0538: Dshi_0538 - protein of unknown function DUF1045 (RefSeq), at 523,844 to 524,515 _0538 Dshi_0539: Dshi_0539 - aldo/keto reductase (RefSeq), at 524,529 to 525,467 _0539 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 522.869 kb on + strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.916 kb on + strand, within Dshi_0537at 522.936 kb on + strand, within Dshi_0537at 522.942 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 523.027 kb on - strand, within Dshi_0537at 523.106 kb on + strand, within Dshi_0537at 523.142 kb on + strand, within Dshi_0537at 523.176 kb on - strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.274 kb on + strand, within Dshi_0537at 523.303 kb on - strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.544 kb on + strandat 523.544 kb on + strandat 523.552 kb on - strandat 523.552 kb on - strandat 523.574 kb on + strandat 523.584 kb on + strandat 523.597 kb on - strandat 523.609 kb on - strandat 523.640 kb on - strandat 523.752 kb on - strandat 523.753 kb on - strandat 523.754 kb on + strandat 523.762 kb on - strandat 523.766 kb on - strandat 523.813 kb on + strandat 523.813 kb on - strandat 524.540 kb on - strandat 524.572 kb on + strandat 524.577 kb on + strandat 524.595 kb on - strandat 524.704 kb on + strand, within Dshi_0539at 524.723 kb on - strand, within Dshi_0539at 524.794 kb on + strand, within Dshi_0539at 524.915 kb on + strand, within Dshi_0539at 524.919 kb on - strand, within Dshi_0539at 524.922 kb on + strand, within Dshi_0539at 524.928 kb on + strand, within Dshi_0539at 524.983 kb on - strand, within Dshi_0539at 524.989 kb on + strand, within Dshi_0539at 525.016 kb on + strand, within Dshi_0539at 525.019 kb on - strand, within Dshi_0539at 525.024 kb on - strand, within Dshi_0539at 525.102 kb on - strand, within Dshi_0539at 525.171 kb on - strand, within Dshi_0539at 525.186 kb on + strand, within Dshi_0539at 525.194 kb on - strand, within Dshi_0539at 525.261 kb on + strand, within Dshi_0539at 525.318 kb on - strand, within Dshi_0539at 525.341 kb on + strand, within Dshi_0539at 525.358 kb on + strand, within Dshi_0539at 525.421 kb on - strandat 525.427 kb on + strandat 525.462 kb on + strandat 525.470 kb on - strandat 525.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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522,869 + Dshi_0537 0.47 -2.1
522,869 + Dshi_0537 0.47 +0.3
522,916 + Dshi_0537 0.50 +0.9
522,936 + Dshi_0537 0.52 -1.7
522,942 - Dshi_0537 0.52 -0.1
522,944 - Dshi_0537 0.52 +1.9
522,944 - Dshi_0537 0.52 +2.0
523,027 - Dshi_0537 0.58 +0.1
523,106 + Dshi_0537 0.63 -1.3
523,142 + Dshi_0537 0.65 +0.1
523,176 - Dshi_0537 0.68 +0.5
523,215 + Dshi_0537 0.70 -0.1
523,215 + Dshi_0537 0.70 -1.8
523,223 - Dshi_0537 0.71 +0.2
523,223 - Dshi_0537 0.71 -1.1
523,223 - Dshi_0537 0.71 +2.1
523,274 + Dshi_0537 0.74 -0.9
523,303 - Dshi_0537 0.76 -2.2
523,393 + Dshi_0537 0.82 -0.4
523,393 + Dshi_0537 0.82 -0.2
523,544 + -0.4
523,544 + +0.7
523,552 - -0.8
523,552 - -0.6
523,574 + +0.3
523,584 + +0.3
523,597 - -0.6
523,609 - -0.9
523,640 - +1.5
523,752 - -1.6
523,753 - -0.5
523,754 + -0.6
523,762 - -2.7
523,766 - -1.0
523,813 + -0.8
523,813 - -1.7
524,540 - +0.6
524,572 + -0.6
524,577 + -0.2
524,595 - -1.2
524,704 + Dshi_0539 0.19 -0.1
524,723 - Dshi_0539 0.21 +2.1
524,794 + Dshi_0539 0.28 -3.4
524,915 + Dshi_0539 0.41 -1.1
524,919 - Dshi_0539 0.42 +0.1
524,922 + Dshi_0539 0.42 +0.9
524,928 + Dshi_0539 0.42 -0.1
524,983 - Dshi_0539 0.48 +1.1
524,989 + Dshi_0539 0.49 +1.2
525,016 + Dshi_0539 0.52 +0.4
525,019 - Dshi_0539 0.52 -0.0
525,024 - Dshi_0539 0.53 -0.3
525,102 - Dshi_0539 0.61 +0.3
525,171 - Dshi_0539 0.68 +0.1
525,186 + Dshi_0539 0.70 +0.1
525,194 - Dshi_0539 0.71 +2.9
525,261 + Dshi_0539 0.78 -0.5
525,318 - Dshi_0539 0.84 -1.9
525,341 + Dshi_0539 0.86 +0.4
525,358 + Dshi_0539 0.88 +1.9
525,421 - +0.4
525,427 + -0.7
525,462 + +0.6
525,470 - -1.2
525,476 + -0.9

Or see this region's nucleotide sequence