Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0423

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0421 and Dshi_0422 are separated by 184 nucleotidesDshi_0422 and Dshi_0423 are separated by 77 nucleotidesDshi_0423 and Dshi_0424 are separated by 616 nucleotides Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Dshi_0422: Dshi_0422 - Propeptide PepSY amd peptidase M4 (RefSeq), at 415,164 to 415,685 _0422 Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488 _0423 Dshi_0424: Dshi_0424 - peptidase M41 (RefSeq), at 417,105 to 417,566 _0424 Position (kb) 415 416 417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 414.766 kb on + strand, within Dshi_0421at 414.799 kb on + strand, within Dshi_0421at 414.802 kb on - strand, within Dshi_0421at 414.813 kb on + strand, within Dshi_0421at 414.925 kb on - strandat 414.930 kb on - strandat 414.951 kb on + strandat 414.988 kb on + strandat 414.996 kb on - strandat 415.015 kb on - strandat 415.030 kb on - strandat 415.045 kb on + strandat 415.055 kb on + strandat 415.063 kb on - strandat 415.135 kb on + strandat 415.140 kb on + strandat 415.238 kb on - strand, within Dshi_0422at 415.298 kb on + strand, within Dshi_0422at 415.340 kb on - strand, within Dshi_0422at 415.346 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.418 kb on + strand, within Dshi_0422at 415.433 kb on - strand, within Dshi_0422at 415.439 kb on - strand, within Dshi_0422at 415.448 kb on + strand, within Dshi_0422at 415.453 kb on + strand, within Dshi_0422at 415.504 kb on + strand, within Dshi_0422at 415.516 kb on - strand, within Dshi_0422at 415.519 kb on + strand, within Dshi_0422at 415.538 kb on - strand, within Dshi_0422at 415.592 kb on + strand, within Dshi_0422at 415.646 kb on + strandat 415.747 kb on - strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.767 kb on - strandat 415.767 kb on - strandat 415.775 kb on - strandat 415.984 kb on - strand, within Dshi_0423at 415.984 kb on - strand, within Dshi_0423at 415.986 kb on - strand, within Dshi_0423at 416.006 kb on - strand, within Dshi_0423at 416.008 kb on + strand, within Dshi_0423at 416.015 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.123 kb on - strand, within Dshi_0423at 416.219 kb on + strand, within Dshi_0423at 416.273 kb on - strand, within Dshi_0423at 416.297 kb on - strand, within Dshi_0423at 416.309 kb on + strand, within Dshi_0423at 416.317 kb on - strand, within Dshi_0423at 416.405 kb on - strand, within Dshi_0423at 416.425 kb on + strandat 416.427 kb on + strandat 416.433 kb on + strandat 416.505 kb on - strandat 416.512 kb on - strandat 416.530 kb on - strandat 416.557 kb on + strandat 416.562 kb on + strandat 416.565 kb on - strandat 416.629 kb on + strandat 416.631 kb on + strandat 416.668 kb on + strandat 416.675 kb on + strandat 416.676 kb on - strandat 416.701 kb on + strandat 416.785 kb on + strandat 416.786 kb on - strandat 416.832 kb on + strandat 416.843 kb on + strandat 416.851 kb on - strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.880 kb on - strandat 416.882 kb on + strandat 416.922 kb on - strandat 417.005 kb on - strandat 417.012 kb on - strandat 417.014 kb on + strandat 417.027 kb on + strandat 417.037 kb on + strandat 417.045 kb on - strandat 417.045 kb on - strandat 417.052 kb on - strandat 417.059 kb on + strandat 417.128 kb on + strandat 417.183 kb on + strand, within Dshi_0424at 417.191 kb on - strand, within Dshi_0424at 417.197 kb on + strand, within Dshi_0424at 417.212 kb on + strand, within Dshi_0424at 417.237 kb on + strand, within Dshi_0424at 417.239 kb on + strand, within Dshi_0424at 417.251 kb on - strand, within Dshi_0424at 417.267 kb on + strand, within Dshi_0424at 417.313 kb on + strand, within Dshi_0424at 417.346 kb on - strand, within Dshi_0424at 417.348 kb on - strand, within Dshi_0424at 417.441 kb on + strand, within Dshi_0424at 417.441 kb on - strand, within Dshi_0424at 417.474 kb on + strand, within Dshi_0424at 417.480 kb on + strand, within Dshi_0424

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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414,766 + Dshi_0421 0.86 -0.4
414,799 + Dshi_0421 0.88 -0.5
414,802 - Dshi_0421 0.88 +1.1
414,813 + Dshi_0421 0.89 +0.5
414,925 - +0.2
414,930 - -1.6
414,951 + -3.7
414,988 + +0.1
414,996 - +0.0
415,015 - -1.4
415,030 - +0.5
415,045 + -2.0
415,055 + +3.4
415,063 - +4.1
415,135 + -0.8
415,140 + -0.0
415,238 - Dshi_0422 0.14 -3.9
415,298 + Dshi_0422 0.26 -1.0
415,340 - Dshi_0422 0.34 -0.4
415,346 + Dshi_0422 0.35 -3.3
415,408 + Dshi_0422 0.47 -3.7
415,408 + Dshi_0422 0.47 -0.1
415,408 + Dshi_0422 0.47 -3.5
415,408 + Dshi_0422 0.47 -2.7
415,408 + Dshi_0422 0.47 +0.2
415,408 + Dshi_0422 0.47 -1.2
415,416 - Dshi_0422 0.48 +2.6
415,416 - Dshi_0422 0.48 -1.6
415,416 - Dshi_0422 0.48 -1.0
415,416 - Dshi_0422 0.48 +1.6
415,416 - Dshi_0422 0.48 -0.3
415,418 + Dshi_0422 0.49 -1.4
415,433 - Dshi_0422 0.52 -1.1
415,439 - Dshi_0422 0.53 -0.0
415,448 + Dshi_0422 0.54 +0.6
415,453 + Dshi_0422 0.55 +0.7
415,504 + Dshi_0422 0.65 +0.6
415,516 - Dshi_0422 0.67 +1.8
415,519 + Dshi_0422 0.68 +0.6
415,538 - Dshi_0422 0.72 -0.2
415,592 + Dshi_0422 0.82 -0.4
415,646 + -0.4
415,747 - -0.1
415,759 + -0.3
415,759 + +0.3
415,759 + -1.0
415,759 + -1.6
415,767 - +0.6
415,767 - -1.4
415,775 - -0.7
415,984 - Dshi_0423 0.30 -1.0
415,984 - Dshi_0423 0.30 -1.2
415,986 - Dshi_0423 0.31 +0.8
416,006 - Dshi_0423 0.33 +0.4
416,008 + Dshi_0423 0.34 -1.3
416,015 + Dshi_0423 0.35 -2.0
416,063 + Dshi_0423 0.41 +2.0
416,063 + Dshi_0423 0.41 -0.6
416,071 - Dshi_0423 0.42 -2.6
416,071 - Dshi_0423 0.42 -0.0
416,088 + Dshi_0423 0.45 +0.5
416,088 + Dshi_0423 0.45 -1.5
416,123 - Dshi_0423 0.50 -0.8
416,219 + Dshi_0423 0.63 -1.6
416,273 - Dshi_0423 0.70 -1.2
416,297 - Dshi_0423 0.74 +0.8
416,309 + Dshi_0423 0.75 +0.5
416,317 - Dshi_0423 0.76 -0.5
416,405 - Dshi_0423 0.88 -2.8
416,425 + -2.0
416,427 + -0.8
416,433 + +1.5
416,505 - -0.4
416,512 - -0.8
416,530 - -1.2
416,557 + -0.9
416,562 + -0.0
416,565 - -0.5
416,629 + -0.8
416,631 + -0.0
416,668 + -0.0
416,675 + -0.3
416,676 - -1.0
416,701 + +0.2
416,785 + -1.1
416,786 - -1.3
416,832 + +0.3
416,843 + +0.7
416,851 - -1.2
416,853 + +0.3
416,853 + -0.0
416,853 + -1.5
416,861 - -1.0
416,861 - +1.5
416,861 - -2.3
416,880 - -0.0
416,882 + -2.4
416,922 - +1.8
417,005 - -0.6
417,012 - -0.7
417,014 + +1.5
417,027 + +0.1
417,037 + -0.7
417,045 - -1.3
417,045 - -2.2
417,052 - +0.3
417,059 + -2.9
417,128 + -1.8
417,183 + Dshi_0424 0.17 -3.9
417,191 - Dshi_0424 0.19 -2.0
417,197 + Dshi_0424 0.20 -0.0
417,212 + Dshi_0424 0.23 +1.5
417,237 + Dshi_0424 0.29 -1.8
417,239 + Dshi_0424 0.29 +1.3
417,251 - Dshi_0424 0.32 -0.8
417,267 + Dshi_0424 0.35 -2.8
417,313 + Dshi_0424 0.45 -4.0
417,346 - Dshi_0424 0.52 +0.8
417,348 - Dshi_0424 0.53 -1.0
417,441 + Dshi_0424 0.73 -2.6
417,441 - Dshi_0424 0.73 -0.0
417,474 + Dshi_0424 0.80 -2.4
417,480 + Dshi_0424 0.81 -0.4

Or see this region's nucleotide sequence