Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0413

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0412 and Dshi_0413 are separated by 49 nucleotidesDshi_0413 and Dshi_0414 are separated by 231 nucleotidesDshi_0414 and Dshi_0415 are separated by 146 nucleotides Dshi_0412: Dshi_0412 - beta-Ig-H3/fasciclin (RefSeq), at 406,254 to 407,786 _0412 Dshi_0413: Dshi_0413 - hypothetical protein (RefSeq), at 407,836 to 408,195 _0413 Dshi_0414: Dshi_0414 - GreA/GreB family elongation factor (RefSeq), at 408,427 to 408,873 _0414 Dshi_0415: Dshi_0415 - hypothetical protein (RefSeq), at 409,020 to 409,262 _0415 Position (kb) 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 406.866 kb on + strand, within Dshi_0412at 406.881 kb on - strand, within Dshi_0412at 406.891 kb on - strand, within Dshi_0412at 406.912 kb on + strand, within Dshi_0412at 406.959 kb on - strandat 406.995 kb on + strand, within Dshi_0412at 407.003 kb on - strand, within Dshi_0412at 407.016 kb on + strand, within Dshi_0412at 407.016 kb on + strand, within Dshi_0412at 407.017 kb on + strand, within Dshi_0412at 407.114 kb on + strand, within Dshi_0412at 407.121 kb on + strand, within Dshi_0412at 407.129 kb on - strand, within Dshi_0412at 407.138 kb on - strand, within Dshi_0412at 407.162 kb on + strand, within Dshi_0412at 407.175 kb on - strand, within Dshi_0412at 407.175 kb on - strand, within Dshi_0412at 407.213 kb on + strand, within Dshi_0412at 407.248 kb on + strand, within Dshi_0412at 407.262 kb on + strand, within Dshi_0412at 407.265 kb on + strand, within Dshi_0412at 407.280 kb on + strand, within Dshi_0412at 407.377 kb on + strandat 407.384 kb on + strand, within Dshi_0412at 407.400 kb on - strand, within Dshi_0412at 407.415 kb on - strand, within Dshi_0412at 407.456 kb on + strand, within Dshi_0412at 407.459 kb on + strand, within Dshi_0412at 407.595 kb on - strand, within Dshi_0412at 407.641 kb on - strandat 407.677 kb on + strandat 407.716 kb on + strandat 407.808 kb on + strandat 407.835 kb on + strandat 407.835 kb on + strandat 407.843 kb on - strandat 407.849 kb on - strandat 407.851 kb on + strandat 407.852 kb on + strandat 407.884 kb on - strand, within Dshi_0413at 407.905 kb on - strand, within Dshi_0413at 407.905 kb on - strand, within Dshi_0413at 407.940 kb on + strand, within Dshi_0413at 407.961 kb on + strand, within Dshi_0413at 407.963 kb on + strand, within Dshi_0413at 407.969 kb on - strand, within Dshi_0413at 407.971 kb on - strand, within Dshi_0413at 407.981 kb on - strand, within Dshi_0413at 408.037 kb on - strand, within Dshi_0413at 408.075 kb on + strand, within Dshi_0413at 408.083 kb on - strand, within Dshi_0413at 408.133 kb on - strand, within Dshi_0413at 408.133 kb on - strand, within Dshi_0413at 408.136 kb on + strand, within Dshi_0413at 408.167 kb on + strandat 408.171 kb on - strandat 408.231 kb on - strandat 408.268 kb on + strandat 408.276 kb on - strandat 408.281 kb on - strandat 408.291 kb on + strandat 408.301 kb on - strandat 408.321 kb on + strandat 408.324 kb on - strandat 408.336 kb on - strandat 408.336 kb on - strandat 408.336 kb on - strandat 408.353 kb on - strandat 408.392 kb on - strandat 408.508 kb on + strand, within Dshi_0414at 408.537 kb on - strand, within Dshi_0414at 408.560 kb on + strand, within Dshi_0414at 408.581 kb on - strand, within Dshi_0414at 408.600 kb on + strand, within Dshi_0414at 408.608 kb on - strand, within Dshi_0414at 408.639 kb on + strand, within Dshi_0414at 408.699 kb on + strand, within Dshi_0414at 408.769 kb on + strand, within Dshi_0414at 408.912 kb on + strandat 408.966 kb on - strandat 408.966 kb on - strandat 409.001 kb on - strandat 409.015 kb on + strandat 409.025 kb on - strandat 409.073 kb on - strand, within Dshi_0415at 409.074 kb on - strand, within Dshi_0415at 409.107 kb on - strand, within Dshi_0415at 409.135 kb on + strand, within Dshi_0415at 409.143 kb on - strand, within Dshi_0415at 409.155 kb on + strand, within Dshi_0415

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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406,866 + Dshi_0412 0.40 -1.0
406,881 - Dshi_0412 0.41 -0.7
406,891 - Dshi_0412 0.42 -3.5
406,912 + Dshi_0412 0.43 -0.8
406,959 - -0.6
406,995 + Dshi_0412 0.48 -0.2
407,003 - Dshi_0412 0.49 -1.1
407,016 + Dshi_0412 0.50 -0.0
407,016 + Dshi_0412 0.50 +0.2
407,017 + Dshi_0412 0.50 +2.8
407,114 + Dshi_0412 0.56 -1.0
407,121 + Dshi_0412 0.57 +0.2
407,129 - Dshi_0412 0.57 -1.0
407,138 - Dshi_0412 0.58 -2.0
407,162 + Dshi_0412 0.59 +1.3
407,175 - Dshi_0412 0.60 -0.0
407,175 - Dshi_0412 0.60 -1.5
407,213 + Dshi_0412 0.63 -1.8
407,248 + Dshi_0412 0.65 -2.0
407,262 + Dshi_0412 0.66 -0.0
407,265 + Dshi_0412 0.66 -0.0
407,280 + Dshi_0412 0.67 -0.9
407,377 + -0.0
407,384 + Dshi_0412 0.74 -0.7
407,400 - Dshi_0412 0.75 -2.3
407,415 - Dshi_0412 0.76 -1.0
407,456 + Dshi_0412 0.78 +0.3
407,459 + Dshi_0412 0.79 -1.3
407,595 - Dshi_0412 0.87 +4.2
407,641 - -0.1
407,677 + -0.3
407,716 + -0.4
407,808 + -1.0
407,835 + +0.4
407,835 + -0.7
407,843 - +1.0
407,849 - -0.7
407,851 + +1.6
407,852 + -0.9
407,884 - Dshi_0413 0.13 -1.6
407,905 - Dshi_0413 0.19 -1.2
407,905 - Dshi_0413 0.19 -1.5
407,940 + Dshi_0413 0.29 -3.0
407,961 + Dshi_0413 0.35 +0.6
407,963 + Dshi_0413 0.35 -2.6
407,969 - Dshi_0413 0.37 -2.5
407,971 - Dshi_0413 0.38 +0.7
407,981 - Dshi_0413 0.40 -3.3
408,037 - Dshi_0413 0.56 -1.7
408,075 + Dshi_0413 0.66 +0.1
408,083 - Dshi_0413 0.69 -1.6
408,133 - Dshi_0413 0.82 -3.0
408,133 - Dshi_0413 0.82 -3.3
408,136 + Dshi_0413 0.83 +2.3
408,167 + +2.6
408,171 - -2.6
408,231 - -0.1
408,268 + +1.3
408,276 - +1.8
408,281 - -2.3
408,291 + -3.0
408,301 - -0.0
408,321 + -0.1
408,324 - -1.6
408,336 - -0.6
408,336 - +1.1
408,336 - -2.7
408,353 - +0.4
408,392 - -0.1
408,508 + Dshi_0414 0.18 +0.8
408,537 - Dshi_0414 0.25 -0.3
408,560 + Dshi_0414 0.30 -1.5
408,581 - Dshi_0414 0.34 -0.1
408,600 + Dshi_0414 0.39 -0.0
408,608 - Dshi_0414 0.40 -0.6
408,639 + Dshi_0414 0.47 +3.0
408,699 + Dshi_0414 0.61 -0.3
408,769 + Dshi_0414 0.77 -1.0
408,912 + -1.1
408,966 - -0.0
408,966 - +1.4
409,001 - -0.0
409,015 + -0.0
409,025 - -0.0
409,073 - Dshi_0415 0.22 -1.1
409,074 - Dshi_0415 0.22 -1.0
409,107 - Dshi_0415 0.36 -2.3
409,135 + Dshi_0415 0.47 -3.0
409,143 - Dshi_0415 0.51 -0.3
409,155 + Dshi_0415 0.56 -0.0

Or see this region's nucleotide sequence