Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0396 and Dshi_0397 are separated by 96 nucleotides Dshi_0397 and Dshi_0398 overlap by 8 nucleotides
Dshi_0396: Dshi_0396 - Recombinase (RefSeq), at 386,137 to 387,813
_0396
Dshi_0397: Dshi_0397 - integrase family protein (RefSeq), at 387,910 to 388,986
_0397
Dshi_0398: Dshi_0398 - integrase family protein (RefSeq), at 388,979 to 390,658
_0398
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 386.920 kb on - strand, within Dshi_0396 at 386.936 kb on - strand, within Dshi_0396 at 386.966 kb on - strand, within Dshi_0396 at 386.967 kb on + strand, within Dshi_0396 at 387.011 kb on - strand, within Dshi_0396 at 387.021 kb on - strand, within Dshi_0396 at 387.084 kb on - strand, within Dshi_0396 at 387.155 kb on - strand, within Dshi_0396 at 387.182 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.260 kb on - strand, within Dshi_0396 at 387.274 kb on + strand, within Dshi_0396 at 387.315 kb on + strand, within Dshi_0396 at 387.323 kb on - strand, within Dshi_0396 at 387.373 kb on + strand, within Dshi_0396 at 387.375 kb on - strand, within Dshi_0396 at 387.493 kb on - strand, within Dshi_0396 at 387.520 kb on + strand, within Dshi_0396 at 387.520 kb on - strand, within Dshi_0396 at 387.528 kb on + strand, within Dshi_0396 at 387.531 kb on - strand, within Dshi_0396 at 387.552 kb on - strand, within Dshi_0396 at 387.606 kb on + strand, within Dshi_0396 at 387.612 kb on - strand, within Dshi_0396 at 387.666 kb on + strand at 387.666 kb on + strand at 387.666 kb on + strand at 387.674 kb on - strand at 387.675 kb on - strand at 387.706 kb on + strand at 387.708 kb on - strand at 387.714 kb on - strand at 387.784 kb on - strand at 387.806 kb on - strand at 387.806 kb on - strand at 387.812 kb on + strand at 387.820 kb on - strand at 387.825 kb on - strand at 387.826 kb on - strand at 387.829 kb on + strand at 387.830 kb on + strand at 387.831 kb on - strand at 387.842 kb on - strand at 387.885 kb on + strand at 387.893 kb on + strand at 387.917 kb on - strand at 387.946 kb on - strand at 387.986 kb on - strand at 387.989 kb on + strand at 387.989 kb on + strand at 387.996 kb on + strand at 387.996 kb on - strand at 388.007 kb on - strand at 388.009 kb on + strand at 388.017 kb on - strand at 388.030 kb on + strand, within Dshi_0397 at 388.030 kb on + strand, within Dshi_0397 at 388.086 kb on + strand, within Dshi_0397 at 388.134 kb on + strand, within Dshi_0397 at 388.134 kb on - strand, within Dshi_0397 at 388.142 kb on - strand, within Dshi_0397 at 388.149 kb on + strand, within Dshi_0397 at 388.199 kb on - strand, within Dshi_0397 at 388.241 kb on - strand, within Dshi_0397 at 388.258 kb on - strand, within Dshi_0397 at 388.299 kb on + strand, within Dshi_0397 at 388.328 kb on - strand, within Dshi_0397 at 388.367 kb on - strand, within Dshi_0397 at 388.403 kb on + strand, within Dshi_0397 at 388.405 kb on + strand, within Dshi_0397 at 388.413 kb on - strand, within Dshi_0397 at 388.451 kb on + strand, within Dshi_0397 at 388.519 kb on + strand, within Dshi_0397 at 388.564 kb on + strand, within Dshi_0397 at 388.630 kb on - strand, within Dshi_0397 at 388.634 kb on + strand, within Dshi_0397 at 388.643 kb on + strand, within Dshi_0397 at 388.670 kb on + strand, within Dshi_0397 at 388.713 kb on - strand, within Dshi_0397 at 388.719 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.808 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.832 kb on - strand, within Dshi_0397 at 388.857 kb on + strand, within Dshi_0397 at 388.857 kb on + strand, within Dshi_0397 at 388.865 kb on - strand, within Dshi_0397 at 388.878 kb on + strand, within Dshi_0397 at 388.886 kb on - strand at 388.886 kb on - strand at 388.886 kb on - strand at 388.886 kb on - strand at 388.937 kb on + strand at 388.938 kb on + strand at 388.945 kb on - strand at 388.947 kb on + strand at 388.979 kb on - strand at 389.016 kb on + strand at 389.026 kb on - strand at 389.037 kb on + strand at 389.038 kb on - strand at 389.085 kb on + strand at 389.140 kb on + strand at 389.152 kb on - strand, within Dshi_0398 at 389.170 kb on + strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.335 kb on + strand, within Dshi_0398 at 389.335 kb on + strand, within Dshi_0398 at 389.335 kb on - strand, within Dshi_0398 at 389.343 kb on - strand, within Dshi_0398 at 389.353 kb on - strand, within Dshi_0398 at 389.370 kb on + strand, within Dshi_0398 at 389.378 kb on + strand, within Dshi_0398 at 389.378 kb on + strand, within Dshi_0398 at 389.378 kb on - strand, within Dshi_0398 at 389.386 kb on + strand, within Dshi_0398 at 389.410 kb on + strand, within Dshi_0398 at 389.416 kb on + strand, within Dshi_0398 at 389.453 kb on + strand, within Dshi_0398 at 389.453 kb on + strand, within Dshi_0398 at 389.458 kb on + strand, within Dshi_0398 at 389.546 kb on + strand, within Dshi_0398 at 389.549 kb on + strand, within Dshi_0398 at 389.549 kb on + strand, within Dshi_0398 at 389.569 kb on - strand, within Dshi_0398 at 389.575 kb on + strand, within Dshi_0398 at 389.605 kb on + strand, within Dshi_0398 at 389.613 kb on - strand, within Dshi_0398 at 389.613 kb on - strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.630 kb on - strand, within Dshi_0398 at 389.632 kb on + strand, within Dshi_0398 at 389.650 kb on + strand, within Dshi_0398 at 389.668 kb on - strand, within Dshi_0398 at 389.698 kb on + strand, within Dshi_0398 at 389.706 kb on + strand, within Dshi_0398 at 389.706 kb on + strand, within Dshi_0398 at 389.714 kb on - strand, within Dshi_0398 at 389.714 kb on - strand, within Dshi_0398 at 389.725 kb on - strand, within Dshi_0398 at 389.782 kb on - strand, within Dshi_0398 at 389.787 kb on - strand, within Dshi_0398 at 389.812 kb on + strand, within Dshi_0398 at 389.813 kb on - strand, within Dshi_0398 at 389.869 kb on + strand, within Dshi_0398 at 389.869 kb on + strand, within Dshi_0398 at 389.878 kb on - strand, within Dshi_0398 at 389.884 kb on + strand, within Dshi_0398 at 389.900 kb on + strand, within Dshi_0398 at 389.939 kb on - strand, within Dshi_0398 at 389.947 kb on + strand, within Dshi_0398 at 389.957 kb on + strand, within Dshi_0398 at 389.964 kb on + strand, within Dshi_0398 at 389.972 kb on - strand, within Dshi_0398 at 389.972 kb on - strand, within Dshi_0398 at 389.975 kb on + strand, within Dshi_0398 at 389.985 kb on - strand, within Dshi_0398 at 389.985 kb on - strand, within Dshi_0398
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 386,920 - Dshi_0396 0.47 -0.3 386,936 - Dshi_0396 0.48 -2.8 386,966 - Dshi_0396 0.49 -1.5 386,967 + Dshi_0396 0.49 -1.4 387,011 - Dshi_0396 0.52 -2.5 387,021 - Dshi_0396 0.53 +0.5 387,084 - Dshi_0396 0.56 +3.6 387,155 - Dshi_0396 0.61 -0.1 387,182 - Dshi_0396 0.62 -2.4 387,203 - Dshi_0396 0.64 -0.0 387,203 - Dshi_0396 0.64 -0.5 387,250 - Dshi_0396 0.66 -0.7 387,250 - Dshi_0396 0.66 +0.3 387,250 - Dshi_0396 0.66 -0.3 387,250 - Dshi_0396 0.66 -0.5 387,260 - Dshi_0396 0.67 -0.6 387,274 + Dshi_0396 0.68 +1.8 387,315 + Dshi_0396 0.70 +0.6 387,323 - Dshi_0396 0.71 -1.4 387,373 + Dshi_0396 0.74 -0.9 387,375 - Dshi_0396 0.74 -0.6 387,493 - Dshi_0396 0.81 +1.7 387,520 + Dshi_0396 0.82 +0.8 387,520 - Dshi_0396 0.82 +1.4 387,528 + Dshi_0396 0.83 -0.1 387,531 - Dshi_0396 0.83 +0.3 387,552 - Dshi_0396 0.84 -1.9 387,606 + Dshi_0396 0.88 +0.6 387,612 - Dshi_0396 0.88 -0.5 387,666 + -0.4 387,666 + +0.7 387,666 + +0.4 387,674 - -0.6 387,675 - +0.6 387,706 + +3.2 387,708 - +0.6 387,714 - +0.8 387,784 - -0.9 387,806 - -0.8 387,806 - -0.5 387,812 + -0.3 387,820 - +0.2 387,825 - -0.3 387,826 - +1.2 387,829 + +1.0 387,830 + -1.0 387,831 - +0.0 387,842 - -2.8 387,885 + +1.2 387,893 + -0.5 387,917 - -0.6 387,946 - +1.0 387,986 - -3.3 387,989 + -0.2 387,989 + -0.0 387,996 + +0.1 387,996 - +0.9 388,007 - +0.0 388,009 + -1.4 388,017 - +0.0 388,030 + Dshi_0397 0.11 +0.1 388,030 + Dshi_0397 0.11 +0.4 388,086 + Dshi_0397 0.16 -0.4 388,134 + Dshi_0397 0.21 -0.4 388,134 - Dshi_0397 0.21 -0.4 388,142 - Dshi_0397 0.22 +2.0 388,149 + Dshi_0397 0.22 -1.8 388,199 - Dshi_0397 0.27 +0.6 388,241 - Dshi_0397 0.31 -0.3 388,258 - Dshi_0397 0.32 +0.7 388,299 + Dshi_0397 0.36 -0.5 388,328 - Dshi_0397 0.39 +0.0 388,367 - Dshi_0397 0.42 -2.2 388,403 + Dshi_0397 0.46 -0.6 388,405 + Dshi_0397 0.46 -1.6 388,413 - Dshi_0397 0.47 -0.8 388,451 + Dshi_0397 0.50 +1.9 388,519 + Dshi_0397 0.57 -1.5 388,564 + Dshi_0397 0.61 -2.5 388,630 - Dshi_0397 0.67 -0.2 388,634 + Dshi_0397 0.67 -1.0 388,643 + Dshi_0397 0.68 +1.6 388,670 + Dshi_0397 0.71 -0.7 388,713 - Dshi_0397 0.75 +1.0 388,719 + Dshi_0397 0.75 -2.3 388,788 + Dshi_0397 0.82 +0.9 388,788 + Dshi_0397 0.82 +1.9 388,788 + Dshi_0397 0.82 -1.8 388,796 - Dshi_0397 0.82 +0.6 388,796 - Dshi_0397 0.82 -0.0 388,796 - Dshi_0397 0.82 +0.1 388,796 - Dshi_0397 0.82 +0.0 388,796 - Dshi_0397 0.82 +0.7 388,796 - Dshi_0397 0.82 -1.8 388,808 + Dshi_0397 0.83 -0.1 388,824 + Dshi_0397 0.85 +1.6 388,824 + Dshi_0397 0.85 -0.4 388,824 + Dshi_0397 0.85 +1.2 388,824 + Dshi_0397 0.85 -2.2 388,832 - Dshi_0397 0.86 -0.6 388,857 + Dshi_0397 0.88 +1.0 388,857 + Dshi_0397 0.88 +0.7 388,865 - Dshi_0397 0.89 -0.9 388,878 + Dshi_0397 0.90 -0.1 388,886 - +0.2 388,886 - -1.0 388,886 - +1.0 388,886 - +0.7 388,937 + +0.4 388,938 + -1.6 388,945 - +1.2 388,947 + +1.0 388,979 - -0.4 389,016 + +0.2 389,026 - +0.2 389,037 + -3.3 389,038 - +1.4 389,085 + +2.8 389,140 + -0.3 389,152 - Dshi_0398 0.10 +0.3 389,170 + Dshi_0398 0.11 -0.2 389,178 - Dshi_0398 0.12 +1.1 389,178 - Dshi_0398 0.12 -0.6 389,178 - Dshi_0398 0.12 +0.1 389,178 - Dshi_0398 0.12 -1.6 389,335 + Dshi_0398 0.21 -0.6 389,335 + Dshi_0398 0.21 +0.6 389,335 - Dshi_0398 0.21 -1.3 389,343 - Dshi_0398 0.22 -0.3 389,353 - Dshi_0398 0.22 +2.0 389,370 + Dshi_0398 0.23 -0.0 389,378 + Dshi_0398 0.24 +0.4 389,378 + Dshi_0398 0.24 +0.8 389,378 - Dshi_0398 0.24 +1.6 389,386 + Dshi_0398 0.24 -0.1 389,410 + Dshi_0398 0.26 +0.6 389,416 + Dshi_0398 0.26 +0.6 389,453 + Dshi_0398 0.28 -0.7 389,453 + Dshi_0398 0.28 +0.4 389,458 + Dshi_0398 0.29 +0.6 389,546 + Dshi_0398 0.34 +0.2 389,549 + Dshi_0398 0.34 -0.5 389,549 + Dshi_0398 0.34 -1.4 389,569 - Dshi_0398 0.35 -1.8 389,575 + Dshi_0398 0.35 -0.2 389,605 + Dshi_0398 0.37 -1.5 389,613 - Dshi_0398 0.38 -1.4 389,613 - Dshi_0398 0.38 -0.5 389,622 + Dshi_0398 0.38 -0.8 389,622 + Dshi_0398 0.38 -0.2 389,622 + Dshi_0398 0.38 -4.7 389,630 - Dshi_0398 0.39 -0.3 389,632 + Dshi_0398 0.39 -0.8 389,650 + Dshi_0398 0.40 +1.0 389,668 - Dshi_0398 0.41 -3.3 389,698 + Dshi_0398 0.43 -0.6 389,706 + Dshi_0398 0.43 +1.7 389,706 + Dshi_0398 0.43 +1.2 389,714 - Dshi_0398 0.44 +0.9 389,714 - Dshi_0398 0.44 +1.3 389,725 - Dshi_0398 0.44 -3.3 389,782 - Dshi_0398 0.48 -0.1 389,787 - Dshi_0398 0.48 -0.8 389,812 + Dshi_0398 0.50 -1.2 389,813 - Dshi_0398 0.50 -3.0 389,869 + Dshi_0398 0.53 +0.7 389,869 + Dshi_0398 0.53 +1.0 389,878 - Dshi_0398 0.54 -1.0 389,884 + Dshi_0398 0.54 +0.4 389,900 + Dshi_0398 0.55 +0.0 389,939 - Dshi_0398 0.57 +0.2 389,947 + Dshi_0398 0.58 +1.0 389,957 + Dshi_0398 0.58 -1.1 389,964 + Dshi_0398 0.59 +0.6 389,972 - Dshi_0398 0.59 -0.3 389,972 - Dshi_0398 0.59 -0.5 389,975 + Dshi_0398 0.59 +0.0 389,985 - Dshi_0398 0.60 +0.0 389,985 - Dshi_0398 0.60 -1.3
Or see this region's nucleotide sequence