Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0371 and Dshi_0372 are separated by 100 nucleotides Dshi_0372 and Dshi_0373 are separated by 144 nucleotides Dshi_0373 and Dshi_0374 are separated by 58 nucleotides Dshi_0374 and Dshi_0375 overlap by 4 nucleotides
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Dshi_0372: Dshi_0372 - hypothetical protein (RefSeq), at 355,405 to 355,728
_0372
Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843
_0373
Dshi_0374: Dshi_0374 - hypothetical protein (RefSeq), at 357,902 to 358,156
_0374
Dshi_0375: Dshi_0375 - ABC transporter related (RefSeq), at 358,153 to 358,974
_0375
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371 at 355.010 kb on + strand, within Dshi_0371 at 355.022 kb on + strand, within Dshi_0371 at 355.199 kb on + strand, within Dshi_0371 at 355.265 kb on + strand at 355.459 kb on + strand, within Dshi_0372 at 355.535 kb on - strand, within Dshi_0372 at 355.575 kb on + strand, within Dshi_0372 at 355.623 kb on + strand, within Dshi_0372 at 355.693 kb on - strand, within Dshi_0372 at 355.697 kb on - strand at 355.912 kb on + strand at 355.960 kb on - strand at 355.990 kb on + strand at 355.997 kb on - strand at 355.998 kb on - strand at 356.066 kb on - strand at 356.066 kb on - strand at 356.109 kb on - strand, within Dshi_0373 at 356.125 kb on + strand, within Dshi_0373 at 356.200 kb on - strand, within Dshi_0373 at 356.214 kb on + strand, within Dshi_0373 at 356.287 kb on - strand, within Dshi_0373 at 356.292 kb on + strand, within Dshi_0373 at 356.297 kb on + strand, within Dshi_0373 at 356.448 kb on + strand, within Dshi_0373 at 356.456 kb on - strand, within Dshi_0373 at 356.483 kb on - strand, within Dshi_0373 at 356.488 kb on + strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.571 kb on - strand, within Dshi_0373 at 356.619 kb on + strand, within Dshi_0373 at 356.635 kb on - strand, within Dshi_0373 at 356.637 kb on - strand, within Dshi_0373 at 356.680 kb on - strand, within Dshi_0373 at 356.706 kb on - strand, within Dshi_0373 at 356.723 kb on - strand, within Dshi_0373 at 356.734 kb on + strand, within Dshi_0373 at 356.747 kb on - strand, within Dshi_0373 at 356.800 kb on + strand, within Dshi_0373 at 356.806 kb on + strand, within Dshi_0373 at 356.808 kb on - strand, within Dshi_0373 at 356.873 kb on + strand, within Dshi_0373 at 356.881 kb on - strand, within Dshi_0373 at 356.918 kb on + strand, within Dshi_0373 at 356.929 kb on + strand, within Dshi_0373 at 357.016 kb on - strand, within Dshi_0373 at 357.018 kb on + strand, within Dshi_0373 at 357.018 kb on + strand, within Dshi_0373 at 357.057 kb on + strand, within Dshi_0373 at 357.073 kb on + strand, within Dshi_0373 at 357.073 kb on - strand, within Dshi_0373 at 357.114 kb on + strand, within Dshi_0373 at 357.152 kb on + strand, within Dshi_0373 at 357.152 kb on + strand, within Dshi_0373 at 357.160 kb on - strand, within Dshi_0373 at 357.219 kb on - strand, within Dshi_0373 at 357.260 kb on + strand, within Dshi_0373 at 357.285 kb on + strand, within Dshi_0373 at 357.292 kb on + strand, within Dshi_0373 at 357.293 kb on - strand, within Dshi_0373 at 357.533 kb on + strand, within Dshi_0373 at 357.645 kb on + strand, within Dshi_0373 at 357.647 kb on + strand at 357.647 kb on + strand at 357.766 kb on + strand at 357.766 kb on + strand at 357.853 kb on + strand at 357.866 kb on - strand at 357.967 kb on + strand, within Dshi_0374 at 358.281 kb on - strand, within Dshi_0375 at 358.415 kb on - strand, within Dshi_0375 at 358.437 kb on + strand, within Dshi_0375 at 358.500 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.690 kb on - strand, within Dshi_0375 at 358.695 kb on - strand, within Dshi_0375 at 358.721 kb on - strand, within Dshi_0375 at 358.836 kb on + strand, within Dshi_0375
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 354,926 + Dshi_0371 0.48 -0.9 354,940 - Dshi_0371 0.50 +0.1 355,010 + Dshi_0371 0.60 -1.9 355,022 + Dshi_0371 0.61 +0.3 355,199 + Dshi_0371 0.86 +1.7 355,265 + -1.2 355,459 + Dshi_0372 0.17 +2.1 355,535 - Dshi_0372 0.40 +0.9 355,575 + Dshi_0372 0.52 +1.0 355,623 + Dshi_0372 0.67 -0.9 355,693 - Dshi_0372 0.89 -0.5 355,697 - -0.0 355,912 + +1.2 355,960 - -0.6 355,990 + +2.9 355,997 - +0.1 355,998 - -2.8 356,066 - +1.5 356,066 - +1.7 356,109 - Dshi_0373 0.12 +0.5 356,125 + Dshi_0373 0.13 +0.5 356,200 - Dshi_0373 0.17 -0.4 356,214 + Dshi_0373 0.17 -0.8 356,287 - Dshi_0373 0.21 +0.1 356,292 + Dshi_0373 0.21 +2.2 356,297 + Dshi_0373 0.22 -0.8 356,448 + Dshi_0373 0.29 +0.1 356,456 - Dshi_0373 0.30 -2.2 356,483 - Dshi_0373 0.31 -0.7 356,488 + Dshi_0373 0.31 -0.3 356,491 - Dshi_0373 0.31 -1.0 356,491 - Dshi_0373 0.31 -2.8 356,571 - Dshi_0373 0.35 +0.1 356,619 + Dshi_0373 0.38 -1.1 356,635 - Dshi_0373 0.39 +1.1 356,637 - Dshi_0373 0.39 +0.8 356,680 - Dshi_0373 0.41 -0.5 356,706 - Dshi_0373 0.42 -0.9 356,723 - Dshi_0373 0.43 -1.4 356,734 + Dshi_0373 0.44 -1.4 356,747 - Dshi_0373 0.44 +1.1 356,800 + Dshi_0373 0.47 -2.1 356,806 + Dshi_0373 0.47 -0.6 356,808 - Dshi_0373 0.47 +0.5 356,873 + Dshi_0373 0.51 +2.1 356,881 - Dshi_0373 0.51 -1.3 356,918 + Dshi_0373 0.53 -1.4 356,929 + Dshi_0373 0.54 -1.2 357,016 - Dshi_0373 0.58 -0.4 357,018 + Dshi_0373 0.58 -1.1 357,018 + Dshi_0373 0.58 -1.3 357,057 + Dshi_0373 0.60 -0.1 357,073 + Dshi_0373 0.61 +0.1 357,073 - Dshi_0373 0.61 -0.4 357,114 + Dshi_0373 0.63 -0.4 357,152 + Dshi_0373 0.65 -1.2 357,152 + Dshi_0373 0.65 -0.3 357,160 - Dshi_0373 0.65 -0.2 357,219 - Dshi_0373 0.68 -0.8 357,260 + Dshi_0373 0.70 -0.5 357,285 + Dshi_0373 0.72 -1.1 357,292 + Dshi_0373 0.72 +0.7 357,293 - Dshi_0373 0.72 -1.6 357,533 + Dshi_0373 0.84 -0.6 357,645 + Dshi_0373 0.90 +0.9 357,647 + +0.1 357,647 + -2.5 357,766 + -2.6 357,766 + -1.1 357,853 + -0.7 357,866 - +0.3 357,967 + Dshi_0374 0.25 -0.8 358,281 - Dshi_0375 0.16 -0.1 358,415 - Dshi_0375 0.32 -1.5 358,437 + Dshi_0375 0.35 -1.6 358,500 + Dshi_0375 0.42 -1.7 358,538 + Dshi_0375 0.47 -0.9 358,538 + Dshi_0375 0.47 -0.4 358,690 - Dshi_0375 0.65 +0.7 358,695 - Dshi_0375 0.66 +0.5 358,721 - Dshi_0375 0.69 +2.5 358,836 + Dshi_0375 0.83 -0.9
Or see this region's nucleotide sequence