Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0343 and Dshi_0344 are separated by 19 nucleotides Dshi_0344 and Dshi_0345 overlap by 4 nucleotides Dshi_0345 and Dshi_0346 are separated by 6 nucleotides Dshi_0346 and Dshi_0347 are separated by 1 nucleotides Dshi_0347 and Dshi_0348 are separated by 28 nucleotides
Dshi_0343: Dshi_0343 - aminoglycoside phosphotransferase (RefSeq), at 330,412 to 331,401
_0343
Dshi_0344: Dshi_0344 - 16S rRNA processing protein RimM (RefSeq), at 331,421 to 331,921
_0344
Dshi_0345: Dshi_0345 - hypothetical protein (RefSeq), at 331,918 to 332,064
_0345
Dshi_0346: Dshi_0346 - protein of unknown function DUF55 (RefSeq), at 332,071 to 332,535
_0346
Dshi_0347: Dshi_0347 - cob(II)yrinic acid a,c-diamide reductase (RefSeq), at 332,537 to 333,166
_0347
Dshi_0348: Dshi_0348 - ribosomal protein S16 (RefSeq), at 333,195 to 333,587
_0348
Position (kb) 332
333 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.104 kb on + strand, within Dshi_0343 at 331.112 kb on - strand, within Dshi_0343 at 331.211 kb on - strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.294 kb on + strand, within Dshi_0343 at 331.302 kb on - strand, within Dshi_0343 at 331.394 kb on - strand at 331.427 kb on - strand at 331.635 kb on - strand, within Dshi_0344 at 331.857 kb on + strand, within Dshi_0344 at 331.910 kb on - strand at 332.033 kb on - strand, within Dshi_0345 at 332.099 kb on - strand at 332.314 kb on + strand, within Dshi_0346 at 332.407 kb on - strand, within Dshi_0346 at 332.419 kb on - strand, within Dshi_0346 at 332.621 kb on - strand, within Dshi_0347 at 332.636 kb on - strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.769 kb on + strand, within Dshi_0347 at 332.804 kb on + strand, within Dshi_0347 at 332.881 kb on - strand, within Dshi_0347 at 333.077 kb on + strand, within Dshi_0347 at 333.282 kb on + strand, within Dshi_0348
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 331,104 + Dshi_0343 0.70 -0.4 331,104 + Dshi_0343 0.70 -2.4 331,104 + Dshi_0343 0.70 -1.3 331,112 - Dshi_0343 0.71 -1.8 331,211 - Dshi_0343 0.81 -3.1 331,294 + Dshi_0343 0.89 -0.8 331,294 + Dshi_0343 0.89 -1.6 331,302 - Dshi_0343 0.90 -0.8 331,394 - -0.8 331,427 - -2.1 331,635 - Dshi_0344 0.43 +0.2 331,857 + Dshi_0344 0.87 +1.2 331,910 - -2.4 332,033 - Dshi_0345 0.78 -0.8 332,099 - +0.2 332,314 + Dshi_0346 0.52 +1.2 332,407 - Dshi_0346 0.72 -3.8 332,419 - Dshi_0346 0.75 -1.0 332,621 - Dshi_0347 0.13 +0.4 332,636 - Dshi_0347 0.16 -2.8 332,724 + Dshi_0347 0.30 -1.8 332,724 + Dshi_0347 0.30 +0.2 332,769 + Dshi_0347 0.37 +2.2 332,804 + Dshi_0347 0.42 +1.2 332,881 - Dshi_0347 0.55 +1.2 333,077 + Dshi_0347 0.86 -1.5 333,282 + Dshi_0348 0.22 -0.8
Or see this region's nucleotide sequence