Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0260

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0258 and Dshi_0259 are separated by 201 nucleotidesDshi_0259 and Dshi_0260 are separated by 103 nucleotidesDshi_0260 and Dshi_0261 are separated by 1 nucleotides Dshi_0258: Dshi_0258 - preprotein translocase, SecE subunit (RefSeq), at 256,271 to 256,471 _0258 Dshi_0259: Dshi_0259 - NusG antitermination factor (RefSeq), at 256,673 to 257,206 _0259 Dshi_0260: Dshi_0260 - ribosomal protein L11 (RefSeq), at 257,310 to 257,735 _0260 Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435 _0261 Position (kb) 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.470 kb on + strandat 256.510 kb on - strandat 258.573 kb on + strandat 258.578 kb on + strandat 258.581 kb on - strandat 258.584 kb on - strandat 258.592 kb on - strandat 258.605 kb on + strandat 258.658 kb on - strandat 258.663 kb on + strandat 258.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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256,470 + +3.1
256,510 - -1.0
258,573 + -0.5
258,578 + -0.1
258,581 - -0.7
258,584 - +0.3
258,592 - -2.3
258,605 + +0.1
258,658 - -3.3
258,663 + +2.1
258,715 - -0.5

Or see this region's nucleotide sequence