Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0187

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0185 and Dshi_0186 overlap by 4 nucleotidesDshi_0186 and Dshi_0187 are separated by 22 nucleotidesDshi_0187 and Dshi_0188 are separated by 662 nucleotides Dshi_0185: Dshi_0185 - phosphatidate cytidylyltransferase (RefSeq), at 186,744 to 187,694 _0185 Dshi_0186: Dshi_0186 - phospholipid/glycerol acyltransferase (RefSeq), at 187,691 to 188,344 _0186 Dshi_0187: Dshi_0187 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 188,367 to 188,981 _0187 Dshi_0188: Dshi_0188 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 189,644 to 190,600 _0188 Position (kb) 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 187.543 kb on + strand, within Dshi_0185at 187.774 kb on + strandat 187.806 kb on + strand, within Dshi_0186at 187.814 kb on - strand, within Dshi_0186at 188.180 kb on + strand, within Dshi_0186at 188.411 kb on - strandat 188.618 kb on + strand, within Dshi_0187at 188.818 kb on - strand, within Dshi_0187at 188.911 kb on + strand, within Dshi_0187at 188.918 kb on - strand, within Dshi_0187at 189.014 kb on - strandat 189.044 kb on + strandat 189.052 kb on - strandat 189.075 kb on - strandat 189.145 kb on + strandat 189.152 kb on + strandat 189.160 kb on - strandat 189.169 kb on - strandat 189.172 kb on - strandat 189.172 kb on - strandat 189.172 kb on - strandat 189.179 kb on + strandat 189.218 kb on - strandat 189.413 kb on + strandat 189.554 kb on - strandat 189.570 kb on + strandat 189.578 kb on - strandat 189.578 kb on - strandat 189.588 kb on - strandat 189.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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187,543 + Dshi_0185 0.84 -1.0
187,774 + -1.3
187,806 + Dshi_0186 0.18 -2.0
187,814 - Dshi_0186 0.19 -1.7
188,180 + Dshi_0186 0.75 -1.7
188,411 - -3.1
188,618 + Dshi_0187 0.41 +0.3
188,818 - Dshi_0187 0.73 +0.3
188,911 + Dshi_0187 0.88 +3.5
188,918 - Dshi_0187 0.90 -0.3
189,014 - -2.4
189,044 + +0.5
189,052 - +0.3
189,075 - +0.3
189,145 + -0.3
189,152 + +0.7
189,160 - +1.3
189,169 - +0.3
189,172 - +2.5
189,172 - -0.7
189,172 - +2.3
189,179 + +3.3
189,218 - +1.9
189,413 + +2.3
189,554 - -0.5
189,570 + -0.7
189,578 - -0.7
189,578 - -1.4
189,588 - +0.3
189,618 - -1.7

Or see this region's nucleotide sequence