Experiment: Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2485 and HP15_2486 are separated by 73 nucleotides HP15_2486 and HP15_2487 are separated by 41 nucleotides HP15_2487 and HP15_2488 overlap by 4 nucleotides
HP15_2485: HP15_2485 - 8-amino-7-oxononanoate synthase, at 2,625,341 to 2,626,516
_2485
HP15_2486: HP15_2486 - biotin synthase, at 2,626,590 to 2,627,648
_2486
HP15_2487: HP15_2487 - competence protein ComF, at 2,627,690 to 2,628,433
_2487
HP15_2488: HP15_2488 - FAD dependent oxidoreductase, at 2,628,430 to 2,629,539
_2488
Position (kb)
2626
2627
2628 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2625.597 kb on - strand, within HP15_2485 at 2625.665 kb on - strand, within HP15_2485 at 2625.669 kb on - strand, within HP15_2485 at 2625.808 kb on - strand, within HP15_2485 at 2625.810 kb on + strand, within HP15_2485 at 2625.818 kb on - strand, within HP15_2485 at 2625.859 kb on - strand, within HP15_2485 at 2625.893 kb on + strand, within HP15_2485 at 2625.956 kb on + strand, within HP15_2485 at 2626.097 kb on + strand, within HP15_2485 at 2626.102 kb on + strand, within HP15_2485 at 2626.105 kb on - strand, within HP15_2485 at 2626.161 kb on + strand, within HP15_2485 at 2626.310 kb on + strand, within HP15_2485 at 2626.310 kb on + strand, within HP15_2485 at 2626.318 kb on - strand, within HP15_2485 at 2626.318 kb on - strand, within HP15_2485 at 2626.408 kb on - strand at 2626.433 kb on + strand at 2626.700 kb on + strand, within HP15_2486 at 2626.708 kb on - strand, within HP15_2486 at 2626.708 kb on - strand, within HP15_2486 at 2626.708 kb on - strand, within HP15_2486 at 2626.772 kb on - strand, within HP15_2486 at 2626.827 kb on - strand, within HP15_2486 at 2626.839 kb on - strand, within HP15_2486 at 2627.081 kb on + strand, within HP15_2486 at 2627.173 kb on + strand, within HP15_2486 at 2627.180 kb on + strand, within HP15_2486 at 2627.219 kb on - strand, within HP15_2486 at 2627.238 kb on - strand, within HP15_2486 at 2627.295 kb on + strand, within HP15_2486 at 2627.303 kb on - strand, within HP15_2486 at 2627.380 kb on + strand, within HP15_2486 at 2627.380 kb on + strand, within HP15_2486 at 2627.380 kb on + strand, within HP15_2486 at 2627.388 kb on - strand, within HP15_2486 at 2627.432 kb on + strand, within HP15_2486 at 2627.474 kb on + strand, within HP15_2486 at 2627.482 kb on - strand, within HP15_2486 at 2627.509 kb on + strand, within HP15_2486 at 2627.509 kb on + strand, within HP15_2486 at 2627.517 kb on - strand, within HP15_2486 at 2627.517 kb on - strand, within HP15_2486 at 2627.573 kb on - strand at 2627.633 kb on + strand at 2627.633 kb on + strand at 2627.829 kb on + strand, within HP15_2487 at 2627.886 kb on + strand, within HP15_2487 at 2627.894 kb on - strand, within HP15_2487 at 2627.894 kb on - strand, within HP15_2487 at 2627.896 kb on + strand, within HP15_2487 at 2627.904 kb on - strand, within HP15_2487 at 2627.904 kb on - strand, within HP15_2487 at 2628.148 kb on + strand, within HP15_2487 at 2628.180 kb on + strand, within HP15_2487 at 2628.187 kb on - strand, within HP15_2487 at 2628.428 kb on + strand at 2628.428 kb on + strand at 2628.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate remove 2,625,597 - HP15_2485 0.22 -0.2 2,625,665 - HP15_2485 0.28 +1.0 2,625,669 - HP15_2485 0.28 +0.2 2,625,808 - HP15_2485 0.40 -0.2 2,625,810 + HP15_2485 0.40 -0.2 2,625,818 - HP15_2485 0.41 -0.4 2,625,859 - HP15_2485 0.44 -0.9 2,625,893 + HP15_2485 0.47 +0.5 2,625,956 + HP15_2485 0.52 -0.2 2,626,097 + HP15_2485 0.64 +2.3 2,626,102 + HP15_2485 0.65 +0.2 2,626,105 - HP15_2485 0.65 +0.4 2,626,161 + HP15_2485 0.70 -0.2 2,626,310 + HP15_2485 0.82 +0.1 2,626,310 + HP15_2485 0.82 -0.1 2,626,318 - HP15_2485 0.83 -0.3 2,626,318 - HP15_2485 0.83 +0.3 2,626,408 - +0.2 2,626,433 + -2.2 2,626,700 + HP15_2486 0.10 -0.6 2,626,708 - HP15_2486 0.11 -0.4 2,626,708 - HP15_2486 0.11 +0.1 2,626,708 - HP15_2486 0.11 -1.0 2,626,772 - HP15_2486 0.17 -0.5 2,626,827 - HP15_2486 0.22 -1.2 2,626,839 - HP15_2486 0.24 -0.1 2,627,081 + HP15_2486 0.46 -0.2 2,627,173 + HP15_2486 0.55 -0.8 2,627,180 + HP15_2486 0.56 -0.3 2,627,219 - HP15_2486 0.59 -0.4 2,627,238 - HP15_2486 0.61 +0.3 2,627,295 + HP15_2486 0.67 -0.4 2,627,303 - HP15_2486 0.67 -0.3 2,627,380 + HP15_2486 0.75 -0.4 2,627,380 + HP15_2486 0.75 -0.3 2,627,380 + HP15_2486 0.75 -1.3 2,627,388 - HP15_2486 0.75 -0.2 2,627,432 + HP15_2486 0.80 -0.7 2,627,474 + HP15_2486 0.83 -0.7 2,627,482 - HP15_2486 0.84 -0.5 2,627,509 + HP15_2486 0.87 +0.3 2,627,509 + HP15_2486 0.87 -0.1 2,627,517 - HP15_2486 0.88 -0.6 2,627,517 - HP15_2486 0.88 -0.3 2,627,573 - -1.0 2,627,633 + -0.1 2,627,633 + -0.5 2,627,829 + HP15_2487 0.19 -0.6 2,627,886 + HP15_2487 0.26 +0.4 2,627,894 - HP15_2487 0.27 -0.0 2,627,894 - HP15_2487 0.27 +0.7 2,627,896 + HP15_2487 0.28 -0.3 2,627,904 - HP15_2487 0.29 -0.4 2,627,904 - HP15_2487 0.29 -0.4 2,628,148 + HP15_2487 0.62 +0.1 2,628,180 + HP15_2487 0.66 +1.0 2,628,187 - HP15_2487 0.67 -0.0 2,628,428 + -0.0 2,628,428 + +0.3 2,628,504 + +0.9
Or see this region's nucleotide sequence