Strain Fitness in Marinobacter adhaerens HP15 around HP15_2486

Experiment: Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2485 and HP15_2486 are separated by 73 nucleotidesHP15_2486 and HP15_2487 are separated by 41 nucleotidesHP15_2487 and HP15_2488 overlap by 4 nucleotides HP15_2485: HP15_2485 - 8-amino-7-oxononanoate synthase, at 2,625,341 to 2,626,516 _2485 HP15_2486: HP15_2486 - biotin synthase, at 2,626,590 to 2,627,648 _2486 HP15_2487: HP15_2487 - competence protein ComF, at 2,627,690 to 2,628,433 _2487 HP15_2488: HP15_2488 - FAD dependent oxidoreductase, at 2,628,430 to 2,629,539 _2488 Position (kb) 2626 2627 2628Strain fitness (log2 ratio) -2 -1 0 1 2at 2625.597 kb on - strand, within HP15_2485at 2625.665 kb on - strand, within HP15_2485at 2625.669 kb on - strand, within HP15_2485at 2625.808 kb on - strand, within HP15_2485at 2625.810 kb on + strand, within HP15_2485at 2625.818 kb on - strand, within HP15_2485at 2625.859 kb on - strand, within HP15_2485at 2625.893 kb on + strand, within HP15_2485at 2625.956 kb on + strand, within HP15_2485at 2626.097 kb on + strand, within HP15_2485at 2626.102 kb on + strand, within HP15_2485at 2626.105 kb on - strand, within HP15_2485at 2626.161 kb on + strand, within HP15_2485at 2626.310 kb on + strand, within HP15_2485at 2626.310 kb on + strand, within HP15_2485at 2626.318 kb on - strand, within HP15_2485at 2626.318 kb on - strand, within HP15_2485at 2626.408 kb on - strandat 2626.433 kb on + strandat 2626.700 kb on + strand, within HP15_2486at 2626.708 kb on - strand, within HP15_2486at 2626.708 kb on - strand, within HP15_2486at 2626.708 kb on - strand, within HP15_2486at 2626.772 kb on - strand, within HP15_2486at 2626.827 kb on - strand, within HP15_2486at 2626.839 kb on - strand, within HP15_2486at 2627.081 kb on + strand, within HP15_2486at 2627.173 kb on + strand, within HP15_2486at 2627.180 kb on + strand, within HP15_2486at 2627.219 kb on - strand, within HP15_2486at 2627.238 kb on - strand, within HP15_2486at 2627.295 kb on + strand, within HP15_2486at 2627.303 kb on - strand, within HP15_2486at 2627.380 kb on + strand, within HP15_2486at 2627.380 kb on + strand, within HP15_2486at 2627.380 kb on + strand, within HP15_2486at 2627.388 kb on - strand, within HP15_2486at 2627.432 kb on + strand, within HP15_2486at 2627.474 kb on + strand, within HP15_2486at 2627.482 kb on - strand, within HP15_2486at 2627.509 kb on + strand, within HP15_2486at 2627.509 kb on + strand, within HP15_2486at 2627.517 kb on - strand, within HP15_2486at 2627.517 kb on - strand, within HP15_2486at 2627.573 kb on - strandat 2627.633 kb on + strandat 2627.633 kb on + strandat 2627.829 kb on + strand, within HP15_2487at 2627.886 kb on + strand, within HP15_2487at 2627.894 kb on - strand, within HP15_2487at 2627.894 kb on - strand, within HP15_2487at 2627.896 kb on + strand, within HP15_2487at 2627.904 kb on - strand, within HP15_2487at 2627.904 kb on - strand, within HP15_2487at 2628.148 kb on + strand, within HP15_2487at 2628.180 kb on + strand, within HP15_2487at 2628.187 kb on - strand, within HP15_2487at 2628.428 kb on + strandat 2628.428 kb on + strandat 2628.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate
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2,625,597 - HP15_2485 0.22 -0.2
2,625,665 - HP15_2485 0.28 +1.0
2,625,669 - HP15_2485 0.28 +0.2
2,625,808 - HP15_2485 0.40 -0.2
2,625,810 + HP15_2485 0.40 -0.2
2,625,818 - HP15_2485 0.41 -0.4
2,625,859 - HP15_2485 0.44 -0.9
2,625,893 + HP15_2485 0.47 +0.5
2,625,956 + HP15_2485 0.52 -0.2
2,626,097 + HP15_2485 0.64 +2.3
2,626,102 + HP15_2485 0.65 +0.2
2,626,105 - HP15_2485 0.65 +0.4
2,626,161 + HP15_2485 0.70 -0.2
2,626,310 + HP15_2485 0.82 +0.1
2,626,310 + HP15_2485 0.82 -0.1
2,626,318 - HP15_2485 0.83 -0.3
2,626,318 - HP15_2485 0.83 +0.3
2,626,408 - +0.2
2,626,433 + -2.2
2,626,700 + HP15_2486 0.10 -0.6
2,626,708 - HP15_2486 0.11 -0.4
2,626,708 - HP15_2486 0.11 +0.1
2,626,708 - HP15_2486 0.11 -1.0
2,626,772 - HP15_2486 0.17 -0.5
2,626,827 - HP15_2486 0.22 -1.2
2,626,839 - HP15_2486 0.24 -0.1
2,627,081 + HP15_2486 0.46 -0.2
2,627,173 + HP15_2486 0.55 -0.8
2,627,180 + HP15_2486 0.56 -0.3
2,627,219 - HP15_2486 0.59 -0.4
2,627,238 - HP15_2486 0.61 +0.3
2,627,295 + HP15_2486 0.67 -0.4
2,627,303 - HP15_2486 0.67 -0.3
2,627,380 + HP15_2486 0.75 -0.4
2,627,380 + HP15_2486 0.75 -0.3
2,627,380 + HP15_2486 0.75 -1.3
2,627,388 - HP15_2486 0.75 -0.2
2,627,432 + HP15_2486 0.80 -0.7
2,627,474 + HP15_2486 0.83 -0.7
2,627,482 - HP15_2486 0.84 -0.5
2,627,509 + HP15_2486 0.87 +0.3
2,627,509 + HP15_2486 0.87 -0.1
2,627,517 - HP15_2486 0.88 -0.6
2,627,517 - HP15_2486 0.88 -0.3
2,627,573 - -1.0
2,627,633 + -0.1
2,627,633 + -0.5
2,627,829 + HP15_2487 0.19 -0.6
2,627,886 + HP15_2487 0.26 +0.4
2,627,894 - HP15_2487 0.27 -0.0
2,627,894 - HP15_2487 0.27 +0.7
2,627,896 + HP15_2487 0.28 -0.3
2,627,904 - HP15_2487 0.29 -0.4
2,627,904 - HP15_2487 0.29 -0.4
2,628,148 + HP15_2487 0.62 +0.1
2,628,180 + HP15_2487 0.66 +1.0
2,628,187 - HP15_2487 0.67 -0.0
2,628,428 + -0.0
2,628,428 + +0.3
2,628,504 + +0.9

Or see this region's nucleotide sequence