Strain Fitness in Marinobacter adhaerens HP15 around HP15_1284

Experiment: Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1283 and HP15_1284 are separated by 205 nucleotidesHP15_1284 and HP15_1285 are separated by 60 nucleotidesHP15_1285 and HP15_1286 are separated by 28 nucleotides HP15_1283: HP15_1283 - RNA polymerase, sigma 70 subunit, RpoD family, at 1,343,618 to 1,344,613 _1283 HP15_1284: HP15_1284 - conserved hypothetical protein, secreted, at 1,344,819 to 1,345,394 _1284 HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093 _1285 HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838 _1286 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -1 0 1at 1343.877 kb on + strand, within HP15_1283at 1343.924 kb on - strand, within HP15_1283at 1343.969 kb on + strand, within HP15_1283at 1343.994 kb on + strand, within HP15_1283at 1343.994 kb on + strand, within HP15_1283at 1343.997 kb on - strand, within HP15_1283at 1344.004 kb on + strand, within HP15_1283at 1344.012 kb on - strand, within HP15_1283at 1344.012 kb on - strand, within HP15_1283at 1344.341 kb on + strand, within HP15_1283at 1344.390 kb on - strand, within HP15_1283at 1344.396 kb on + strand, within HP15_1283at 1344.495 kb on - strand, within HP15_1283at 1344.538 kb on - strandat 1344.750 kb on + strandat 1344.750 kb on + strandat 1344.758 kb on - strandat 1344.864 kb on + strandat 1344.978 kb on - strand, within HP15_1284at 1345.195 kb on - strand, within HP15_1284at 1345.383 kb on + strandat 1345.512 kb on + strandat 1345.629 kb on - strand, within HP15_1285at 1345.654 kb on - strand, within HP15_1285at 1345.709 kb on - strand, within HP15_1285at 1345.713 kb on + strand, within HP15_1285at 1345.721 kb on - strand, within HP15_1285at 1345.721 kb on - strand, within HP15_1285at 1345.853 kb on + strand, within HP15_1285at 1345.853 kb on + strand, within HP15_1285at 1345.895 kb on + strand, within HP15_1285at 1345.907 kb on + strand, within HP15_1285at 1345.947 kb on - strand, within HP15_1285at 1345.955 kb on + strand, within HP15_1285at 1345.990 kb on - strand, within HP15_1285at 1346.017 kb on - strand, within HP15_1285at 1346.059 kb on - strandat 1346.098 kb on + strandat 1346.341 kb on - strand, within HP15_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate
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1,343,877 + HP15_1283 0.26 +0.7
1,343,924 - HP15_1283 0.31 -0.3
1,343,969 + HP15_1283 0.35 +0.1
1,343,994 + HP15_1283 0.38 -0.2
1,343,994 + HP15_1283 0.38 -0.2
1,343,997 - HP15_1283 0.38 +0.0
1,344,004 + HP15_1283 0.39 +0.5
1,344,012 - HP15_1283 0.40 +0.3
1,344,012 - HP15_1283 0.40 -0.2
1,344,341 + HP15_1283 0.73 +0.4
1,344,390 - HP15_1283 0.78 +0.4
1,344,396 + HP15_1283 0.78 +0.4
1,344,495 - HP15_1283 0.88 -0.9
1,344,538 - -0.0
1,344,750 + +0.6
1,344,750 + +0.2
1,344,758 - +0.6
1,344,864 + +0.3
1,344,978 - HP15_1284 0.28 -0.2
1,345,195 - HP15_1284 0.65 +0.3
1,345,383 + -0.4
1,345,512 + -1.0
1,345,629 - HP15_1285 0.27 -0.0
1,345,654 - HP15_1285 0.31 +0.4
1,345,709 - HP15_1285 0.40 +0.9
1,345,713 + HP15_1285 0.40 -0.1
1,345,721 - HP15_1285 0.42 +0.5
1,345,721 - HP15_1285 0.42 -0.2
1,345,853 + HP15_1285 0.62 +1.0
1,345,853 + HP15_1285 0.62 +0.2
1,345,895 + HP15_1285 0.69 +0.9
1,345,907 + HP15_1285 0.71 +0.4
1,345,947 - HP15_1285 0.77 +0.1
1,345,955 + HP15_1285 0.78 -0.1
1,345,990 - HP15_1285 0.84 +0.5
1,346,017 - HP15_1285 0.88 +1.1
1,346,059 - +0.3
1,346,098 + +0.4
1,346,341 - HP15_1286 0.31 -0.7

Or see this region's nucleotide sequence