Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4070 and Shewana3_4071 are separated by 628 nucleotides Shewana3_4071 and Shewana3_4072 are separated by 14 nucleotides Shewana3_4072 and Shewana3_4073 are separated by 248 nucleotides
Shewana3_4070: Shewana3_4070 - ABC transporter related (RefSeq), at 4,890,793 to 4,892,157
_4070
Shewana3_4071: Shewana3_4071 - isochorismate synthases (RefSeq), at 4,892,786 to 4,894,144
_4071
Shewana3_4072: Shewana3_4072 - hypothetical protein (RefSeq), at 4,894,159 to 4,894,884
_4072
Shewana3_4073: Shewana3_4073 - hypothetical protein (RefSeq), at 4,895,133 to 4,895,786
_4073
Position (kb)
4892
4893
4894
4895 Strain fitness (log2 ratio)
-1
0
1 at 4891.841 kb on + strand, within Shewana3_4070 at 4891.877 kb on - strand, within Shewana3_4070 at 4891.899 kb on + strand, within Shewana3_4070 at 4892.000 kb on + strand, within Shewana3_4070 at 4892.059 kb on + strand at 4892.059 kb on + strand at 4892.067 kb on - strand at 4892.067 kb on - strand at 4892.335 kb on + strand at 4892.350 kb on + strand at 4892.384 kb on - strand at 4892.398 kb on + strand at 4892.398 kb on + strand at 4892.398 kb on + strand at 4892.757 kb on + strand at 4892.793 kb on + strand at 4892.801 kb on - strand at 4892.801 kb on - strand at 4892.811 kb on + strand at 4892.812 kb on + strand at 4892.820 kb on - strand at 4893.054 kb on - strand, within Shewana3_4071 at 4893.158 kb on + strand, within Shewana3_4071 at 4893.292 kb on - strand, within Shewana3_4071 at 4893.371 kb on - strand, within Shewana3_4071 at 4893.563 kb on - strand, within Shewana3_4071 at 4893.658 kb on - strand, within Shewana3_4071 at 4893.658 kb on - strand, within Shewana3_4071 at 4893.663 kb on - strand, within Shewana3_4071 at 4893.822 kb on + strand, within Shewana3_4071 at 4893.881 kb on - strand, within Shewana3_4071 at 4893.932 kb on + strand, within Shewana3_4071 at 4893.940 kb on - strand, within Shewana3_4071 at 4893.940 kb on - strand, within Shewana3_4071 at 4894.313 kb on - strand, within Shewana3_4072 at 4894.519 kb on + strand, within Shewana3_4072 at 4894.523 kb on + strand, within Shewana3_4072 at 4894.527 kb on - strand, within Shewana3_4072 at 4894.637 kb on - strand, within Shewana3_4072 at 4894.649 kb on + strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.910 kb on + strand at 4894.910 kb on - strand at 4894.918 kb on - strand at 4894.934 kb on + strand at 4895.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,891,841 + Shewana3_4070 0.77 -0.9 4,891,877 - Shewana3_4070 0.79 +0.7 4,891,899 + Shewana3_4070 0.81 +0.2 4,892,000 + Shewana3_4070 0.88 +0.2 4,892,059 + -1.4 4,892,059 + -0.5 4,892,067 - +0.2 4,892,067 - +0.7 4,892,335 + +0.2 4,892,350 + +0.6 4,892,384 - -0.8 4,892,398 + +0.5 4,892,398 + -0.1 4,892,398 + -1.0 4,892,757 + +0.5 4,892,793 + -1.7 4,892,801 - -1.1 4,892,801 - +0.4 4,892,811 + +0.5 4,892,812 + +0.5 4,892,820 - +0.4 4,893,054 - Shewana3_4071 0.20 -1.2 4,893,158 + Shewana3_4071 0.27 -0.7 4,893,292 - Shewana3_4071 0.37 -1.0 4,893,371 - Shewana3_4071 0.43 -0.1 4,893,563 - Shewana3_4071 0.57 +0.4 4,893,658 - Shewana3_4071 0.64 -0.8 4,893,658 - Shewana3_4071 0.64 -1.0 4,893,663 - Shewana3_4071 0.65 +0.5 4,893,822 + Shewana3_4071 0.76 +0.8 4,893,881 - Shewana3_4071 0.81 +0.3 4,893,932 + Shewana3_4071 0.84 -0.8 4,893,940 - Shewana3_4071 0.85 -0.3 4,893,940 - Shewana3_4071 0.85 -1.6 4,894,313 - Shewana3_4072 0.21 +0.5 4,894,519 + Shewana3_4072 0.50 +0.5 4,894,523 + Shewana3_4072 0.50 +0.1 4,894,527 - Shewana3_4072 0.51 +0.7 4,894,637 - Shewana3_4072 0.66 +0.2 4,894,649 + Shewana3_4072 0.67 +0.2 4,894,693 - Shewana3_4072 0.74 +0.5 4,894,693 - Shewana3_4072 0.74 +0.5 4,894,910 + -0.5 4,894,910 - +0.1 4,894,918 - -0.7 4,894,934 + +0.1 4,895,109 - -0.8
Or see this region's nucleotide sequence