Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4071

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4070 and Shewana3_4071 are separated by 628 nucleotidesShewana3_4071 and Shewana3_4072 are separated by 14 nucleotidesShewana3_4072 and Shewana3_4073 are separated by 248 nucleotides Shewana3_4070: Shewana3_4070 - ABC transporter related (RefSeq), at 4,890,793 to 4,892,157 _4070 Shewana3_4071: Shewana3_4071 - isochorismate synthases (RefSeq), at 4,892,786 to 4,894,144 _4071 Shewana3_4072: Shewana3_4072 - hypothetical protein (RefSeq), at 4,894,159 to 4,894,884 _4072 Shewana3_4073: Shewana3_4073 - hypothetical protein (RefSeq), at 4,895,133 to 4,895,786 _4073 Position (kb) 4892 4893 4894 4895Strain fitness (log2 ratio) -1 0 1at 4891.841 kb on + strand, within Shewana3_4070at 4891.877 kb on - strand, within Shewana3_4070at 4891.899 kb on + strand, within Shewana3_4070at 4892.000 kb on + strand, within Shewana3_4070at 4892.059 kb on + strandat 4892.059 kb on + strandat 4892.067 kb on - strandat 4892.067 kb on - strandat 4892.335 kb on + strandat 4892.350 kb on + strandat 4892.384 kb on - strandat 4892.398 kb on + strandat 4892.398 kb on + strandat 4892.398 kb on + strandat 4892.757 kb on + strandat 4892.793 kb on + strandat 4892.801 kb on - strandat 4892.801 kb on - strandat 4892.811 kb on + strandat 4892.812 kb on + strandat 4892.820 kb on - strandat 4893.054 kb on - strand, within Shewana3_4071at 4893.158 kb on + strand, within Shewana3_4071at 4893.292 kb on - strand, within Shewana3_4071at 4893.371 kb on - strand, within Shewana3_4071at 4893.563 kb on - strand, within Shewana3_4071at 4893.658 kb on - strand, within Shewana3_4071at 4893.658 kb on - strand, within Shewana3_4071at 4893.663 kb on - strand, within Shewana3_4071at 4893.822 kb on + strand, within Shewana3_4071at 4893.881 kb on - strand, within Shewana3_4071at 4893.932 kb on + strand, within Shewana3_4071at 4893.940 kb on - strand, within Shewana3_4071at 4893.940 kb on - strand, within Shewana3_4071at 4894.313 kb on - strand, within Shewana3_4072at 4894.519 kb on + strand, within Shewana3_4072at 4894.523 kb on + strand, within Shewana3_4072at 4894.527 kb on - strand, within Shewana3_4072at 4894.637 kb on - strand, within Shewana3_4072at 4894.649 kb on + strand, within Shewana3_4072at 4894.693 kb on - strand, within Shewana3_4072at 4894.693 kb on - strand, within Shewana3_4072at 4894.910 kb on + strandat 4894.910 kb on - strandat 4894.918 kb on - strandat 4894.934 kb on + strandat 4895.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,891,841 + Shewana3_4070 0.77 -0.9
4,891,877 - Shewana3_4070 0.79 +0.7
4,891,899 + Shewana3_4070 0.81 +0.2
4,892,000 + Shewana3_4070 0.88 +0.2
4,892,059 + -1.4
4,892,059 + -0.5
4,892,067 - +0.2
4,892,067 - +0.7
4,892,335 + +0.2
4,892,350 + +0.6
4,892,384 - -0.8
4,892,398 + +0.5
4,892,398 + -0.1
4,892,398 + -1.0
4,892,757 + +0.5
4,892,793 + -1.7
4,892,801 - -1.1
4,892,801 - +0.4
4,892,811 + +0.5
4,892,812 + +0.5
4,892,820 - +0.4
4,893,054 - Shewana3_4071 0.20 -1.2
4,893,158 + Shewana3_4071 0.27 -0.7
4,893,292 - Shewana3_4071 0.37 -1.0
4,893,371 - Shewana3_4071 0.43 -0.1
4,893,563 - Shewana3_4071 0.57 +0.4
4,893,658 - Shewana3_4071 0.64 -0.8
4,893,658 - Shewana3_4071 0.64 -1.0
4,893,663 - Shewana3_4071 0.65 +0.5
4,893,822 + Shewana3_4071 0.76 +0.8
4,893,881 - Shewana3_4071 0.81 +0.3
4,893,932 + Shewana3_4071 0.84 -0.8
4,893,940 - Shewana3_4071 0.85 -0.3
4,893,940 - Shewana3_4071 0.85 -1.6
4,894,313 - Shewana3_4072 0.21 +0.5
4,894,519 + Shewana3_4072 0.50 +0.5
4,894,523 + Shewana3_4072 0.50 +0.1
4,894,527 - Shewana3_4072 0.51 +0.7
4,894,637 - Shewana3_4072 0.66 +0.2
4,894,649 + Shewana3_4072 0.67 +0.2
4,894,693 - Shewana3_4072 0.74 +0.5
4,894,693 - Shewana3_4072 0.74 +0.5
4,894,910 + -0.5
4,894,910 - +0.1
4,894,918 - -0.7
4,894,934 + +0.1
4,895,109 - -0.8

Or see this region's nucleotide sequence