Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3725

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3724 and Shewana3_3725 are separated by 241 nucleotidesShewana3_3725 and Shewana3_3726 overlap by 1 nucleotidesShewana3_3726 and Shewana3_3727 overlap by 4 nucleotides Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881 _3724 Shewana3_3725: Shewana3_3725 - demethylmenaquinone methyltransferase (RefSeq), at 4,468,123 to 4,468,878 _3725 Shewana3_3726: Shewana3_3726 - hypothetical protein (RefSeq), at 4,468,878 to 4,469,498 _3726 Shewana3_3727: Shewana3_3727 - 2-octaprenylphenol hydroxylase (RefSeq), at 4,469,495 to 4,471,144 _3727 Position (kb) 4468 4469Strain fitness (log2 ratio) -2 -1 0 1at 4467.178 kb on + strand, within Shewana3_3724at 4467.183 kb on + strand, within Shewana3_3724at 4467.191 kb on - strand, within Shewana3_3724at 4467.270 kb on - strand, within Shewana3_3724at 4467.444 kb on + strand, within Shewana3_3724at 4467.463 kb on + strand, within Shewana3_3724at 4467.700 kb on + strand, within Shewana3_3724at 4467.738 kb on + strand, within Shewana3_3724at 4467.755 kb on - strand, within Shewana3_3724at 4467.778 kb on + strandat 4467.873 kb on + strandat 4467.947 kb on - strandat 4468.077 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
4,467,178 + Shewana3_3724 0.33 -1.6
4,467,183 + Shewana3_3724 0.34 -1.9
4,467,191 - Shewana3_3724 0.34 -1.3
4,467,270 - Shewana3_3724 0.42 -2.7
4,467,444 + Shewana3_3724 0.58 -0.1
4,467,463 + Shewana3_3724 0.60 -0.1
4,467,700 + Shewana3_3724 0.83 -2.2
4,467,738 + Shewana3_3724 0.86 -1.4
4,467,755 - Shewana3_3724 0.88 +0.0
4,467,778 + +0.6
4,467,873 + +0.0
4,467,947 - -1.2
4,468,077 + -1.1

Or see this region's nucleotide sequence