Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3617 and Shewana3_3618 are separated by 2 nucleotides Shewana3_3618 and Shewana3_3619 are separated by 12 nucleotides Shewana3_3619 and Shewana3_3620 are separated by 379 nucleotides
Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424
_3617
Shewana3_3618: Shewana3_3618 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,344,427 to 4,344,993
_3618
Shewana3_3619: Shewana3_3619 - molybdopterin oxidoreductase (RefSeq), at 4,345,006 to 4,347,300
_3619
Shewana3_3620: Shewana3_3620 - pentapeptide repeat-containing protein (RefSeq), at 4,347,680 to 4,348,306
_3620
Position (kb)
4345
4346
4347
4348 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4344.136 kb on + strand, within Shewana3_3617 at 4344.270 kb on - strand, within Shewana3_3617 at 4344.462 kb on + strand at 4344.469 kb on - strand at 4344.535 kb on - strand, within Shewana3_3618 at 4345.090 kb on + strand at 4345.098 kb on - strand at 4345.160 kb on + strand at 4345.160 kb on + strand at 4345.362 kb on + strand, within Shewana3_3619 at 4345.444 kb on - strand, within Shewana3_3619 at 4345.451 kb on - strand, within Shewana3_3619 at 4345.543 kb on - strand, within Shewana3_3619 at 4345.598 kb on - strand, within Shewana3_3619 at 4345.701 kb on + strand, within Shewana3_3619 at 4345.709 kb on - strand, within Shewana3_3619 at 4345.789 kb on - strand, within Shewana3_3619 at 4345.885 kb on + strand, within Shewana3_3619 at 4345.885 kb on + strand, within Shewana3_3619 at 4345.885 kb on + strand, within Shewana3_3619 at 4346.070 kb on - strand, within Shewana3_3619 at 4346.108 kb on + strand, within Shewana3_3619 at 4346.187 kb on + strand, within Shewana3_3619 at 4346.193 kb on + strand, within Shewana3_3619 at 4346.282 kb on - strand, within Shewana3_3619 at 4346.456 kb on + strand, within Shewana3_3619 at 4346.718 kb on + strand, within Shewana3_3619 at 4346.729 kb on + strand, within Shewana3_3619 at 4346.865 kb on + strand, within Shewana3_3619 at 4347.164 kb on + strand at 4347.170 kb on + strand at 4347.170 kb on + strand at 4347.246 kb on + strand at 4347.307 kb on + strand at 4347.507 kb on + strand at 4347.507 kb on + strand at 4347.705 kb on - strand at 4347.998 kb on + strand, within Shewana3_3620 at 4348.022 kb on + strand, within Shewana3_3620 at 4348.025 kb on - strand, within Shewana3_3620 at 4348.087 kb on + strand, within Shewana3_3620 at 4348.220 kb on - strand, within Shewana3_3620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,344,136 + Shewana3_3617 0.69 -1.3 4,344,270 - Shewana3_3617 0.84 -0.0 4,344,462 + -0.3 4,344,469 - +0.6 4,344,535 - Shewana3_3618 0.19 +0.0 4,345,090 + +0.2 4,345,098 - +0.1 4,345,160 + -0.4 4,345,160 + -1.0 4,345,362 + Shewana3_3619 0.16 +0.0 4,345,444 - Shewana3_3619 0.19 -0.2 4,345,451 - Shewana3_3619 0.19 +0.0 4,345,543 - Shewana3_3619 0.23 -1.4 4,345,598 - Shewana3_3619 0.26 -1.5 4,345,701 + Shewana3_3619 0.30 -0.2 4,345,709 - Shewana3_3619 0.31 -1.8 4,345,789 - Shewana3_3619 0.34 +0.2 4,345,885 + Shewana3_3619 0.38 +0.3 4,345,885 + Shewana3_3619 0.38 +0.4 4,345,885 + Shewana3_3619 0.38 +0.5 4,346,070 - Shewana3_3619 0.46 -1.0 4,346,108 + Shewana3_3619 0.48 +0.1 4,346,187 + Shewana3_3619 0.51 -1.3 4,346,193 + Shewana3_3619 0.52 +0.2 4,346,282 - Shewana3_3619 0.56 -0.2 4,346,456 + Shewana3_3619 0.63 +0.2 4,346,718 + Shewana3_3619 0.75 -0.4 4,346,729 + Shewana3_3619 0.75 +0.2 4,346,865 + Shewana3_3619 0.81 +0.5 4,347,164 + -3.1 4,347,170 + +0.5 4,347,170 + +0.7 4,347,246 + +0.3 4,347,307 + -1.4 4,347,507 + -0.2 4,347,507 + +0.4 4,347,705 - -1.7 4,347,998 + Shewana3_3620 0.51 +0.3 4,348,022 + Shewana3_3620 0.55 -1.3 4,348,025 - Shewana3_3620 0.55 -0.3 4,348,087 + Shewana3_3620 0.65 +0.2 4,348,220 - Shewana3_3620 0.86 +0.0
Or see this region's nucleotide sequence