Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3619

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3617 and Shewana3_3618 are separated by 2 nucleotidesShewana3_3618 and Shewana3_3619 are separated by 12 nucleotidesShewana3_3619 and Shewana3_3620 are separated by 379 nucleotides Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424 _3617 Shewana3_3618: Shewana3_3618 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,344,427 to 4,344,993 _3618 Shewana3_3619: Shewana3_3619 - molybdopterin oxidoreductase (RefSeq), at 4,345,006 to 4,347,300 _3619 Shewana3_3620: Shewana3_3620 - pentapeptide repeat-containing protein (RefSeq), at 4,347,680 to 4,348,306 _3620 Position (kb) 4345 4346 4347 4348Strain fitness (log2 ratio) -3 -2 -1 0 1at 4344.136 kb on + strand, within Shewana3_3617at 4344.270 kb on - strand, within Shewana3_3617at 4344.462 kb on + strandat 4344.469 kb on - strandat 4344.535 kb on - strand, within Shewana3_3618at 4345.090 kb on + strandat 4345.098 kb on - strandat 4345.160 kb on + strandat 4345.160 kb on + strandat 4345.362 kb on + strand, within Shewana3_3619at 4345.444 kb on - strand, within Shewana3_3619at 4345.451 kb on - strand, within Shewana3_3619at 4345.543 kb on - strand, within Shewana3_3619at 4345.598 kb on - strand, within Shewana3_3619at 4345.701 kb on + strand, within Shewana3_3619at 4345.709 kb on - strand, within Shewana3_3619at 4345.789 kb on - strand, within Shewana3_3619at 4345.885 kb on + strand, within Shewana3_3619at 4345.885 kb on + strand, within Shewana3_3619at 4345.885 kb on + strand, within Shewana3_3619at 4346.070 kb on - strand, within Shewana3_3619at 4346.108 kb on + strand, within Shewana3_3619at 4346.187 kb on + strand, within Shewana3_3619at 4346.193 kb on + strand, within Shewana3_3619at 4346.282 kb on - strand, within Shewana3_3619at 4346.456 kb on + strand, within Shewana3_3619at 4346.718 kb on + strand, within Shewana3_3619at 4346.729 kb on + strand, within Shewana3_3619at 4346.865 kb on + strand, within Shewana3_3619at 4347.164 kb on + strandat 4347.170 kb on + strandat 4347.170 kb on + strandat 4347.246 kb on + strandat 4347.307 kb on + strandat 4347.507 kb on + strandat 4347.507 kb on + strandat 4347.705 kb on - strandat 4347.998 kb on + strand, within Shewana3_3620at 4348.022 kb on + strand, within Shewana3_3620at 4348.025 kb on - strand, within Shewana3_3620at 4348.087 kb on + strand, within Shewana3_3620at 4348.220 kb on - strand, within Shewana3_3620

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,344,136 + Shewana3_3617 0.69 -1.3
4,344,270 - Shewana3_3617 0.84 -0.0
4,344,462 + -0.3
4,344,469 - +0.6
4,344,535 - Shewana3_3618 0.19 +0.0
4,345,090 + +0.2
4,345,098 - +0.1
4,345,160 + -0.4
4,345,160 + -1.0
4,345,362 + Shewana3_3619 0.16 +0.0
4,345,444 - Shewana3_3619 0.19 -0.2
4,345,451 - Shewana3_3619 0.19 +0.0
4,345,543 - Shewana3_3619 0.23 -1.4
4,345,598 - Shewana3_3619 0.26 -1.5
4,345,701 + Shewana3_3619 0.30 -0.2
4,345,709 - Shewana3_3619 0.31 -1.8
4,345,789 - Shewana3_3619 0.34 +0.2
4,345,885 + Shewana3_3619 0.38 +0.3
4,345,885 + Shewana3_3619 0.38 +0.4
4,345,885 + Shewana3_3619 0.38 +0.5
4,346,070 - Shewana3_3619 0.46 -1.0
4,346,108 + Shewana3_3619 0.48 +0.1
4,346,187 + Shewana3_3619 0.51 -1.3
4,346,193 + Shewana3_3619 0.52 +0.2
4,346,282 - Shewana3_3619 0.56 -0.2
4,346,456 + Shewana3_3619 0.63 +0.2
4,346,718 + Shewana3_3619 0.75 -0.4
4,346,729 + Shewana3_3619 0.75 +0.2
4,346,865 + Shewana3_3619 0.81 +0.5
4,347,164 + -3.1
4,347,170 + +0.5
4,347,170 + +0.7
4,347,246 + +0.3
4,347,307 + -1.4
4,347,507 + -0.2
4,347,507 + +0.4
4,347,705 - -1.7
4,347,998 + Shewana3_3620 0.51 +0.3
4,348,022 + Shewana3_3620 0.55 -1.3
4,348,025 - Shewana3_3620 0.55 -0.3
4,348,087 + Shewana3_3620 0.65 +0.2
4,348,220 - Shewana3_3620 0.86 +0.0

Or see this region's nucleotide sequence