Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3569

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgroEL and groES are separated by 57 nucleotidesgroES and Shewana3_3569 are separated by 227 nucleotidesShewana3_3569 and Shewana3_3570 overlap by 4 nucleotides Shewana3_3567: groEL - chaperonin GroEL (RefSeq), at 4,278,553 to 4,280,190 groEL Shewana3_3568: groES - co-chaperonin GroES (RefSeq), at 4,280,248 to 4,280,538 groES Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124 _3569 Shewana3_3570: Shewana3_3570 - LysR family transcriptional regulator (RefSeq), at 4,282,121 to 4,283,116 _3570 Position (kb) 4280 4281 4282 4283Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4280.781 kb on + strandat 4281.009 kb on + strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.133 kb on + strand, within Shewana3_3569at 4281.223 kb on + strand, within Shewana3_3569at 4281.369 kb on + strand, within Shewana3_3569at 4281.830 kb on - strand, within Shewana3_3569at 4281.885 kb on + strand, within Shewana3_3569at 4281.885 kb on + strand, within Shewana3_3569at 4281.917 kb on + strand, within Shewana3_3569at 4281.917 kb on + strand, within Shewana3_3569at 4282.007 kb on + strandat 4282.039 kb on - strandat 4282.408 kb on + strand, within Shewana3_3570at 4282.490 kb on - strand, within Shewana3_3570at 4282.587 kb on + strand, within Shewana3_3570at 4282.637 kb on + strand, within Shewana3_3570at 4282.662 kb on - strand, within Shewana3_3570at 4282.812 kb on - strand, within Shewana3_3570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,280,781 + +0.5
4,281,009 + Shewana3_3569 0.18 +2.3
4,281,072 - Shewana3_3569 0.23 +2.5
4,281,072 - Shewana3_3569 0.23 +0.1
4,281,133 + Shewana3_3569 0.27 +1.9
4,281,223 + Shewana3_3569 0.34 +1.9
4,281,369 + Shewana3_3569 0.44 -1.4
4,281,830 - Shewana3_3569 0.78 +3.6
4,281,885 + Shewana3_3569 0.82 +2.6
4,281,885 + Shewana3_3569 0.82 +2.3
4,281,917 + Shewana3_3569 0.85 +1.9
4,281,917 + Shewana3_3569 0.85 +0.9
4,282,007 + +0.3
4,282,039 - +2.5
4,282,408 + Shewana3_3570 0.29 -2.0
4,282,490 - Shewana3_3570 0.37 -1.6
4,282,587 + Shewana3_3570 0.47 -0.9
4,282,637 + Shewana3_3570 0.52 -3.1
4,282,662 - Shewana3_3570 0.54 -2.0
4,282,812 - Shewana3_3570 0.69 -0.5

Or see this region's nucleotide sequence