Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3471 and Shewana3_3472 are separated by 281 nucleotides Shewana3_3472 and Shewana3_3473 are separated by 465 nucleotides
Shewana3_3471: Shewana3_3471 - putative signal transduction protein (RefSeq), at 4,162,800 to 4,163,528
_3471
Shewana3_3472: Shewana3_3472 - TonB-dependent siderophore receptor (RefSeq), at 4,163,810 to 4,165,771
_3472
Shewana3_3473: Shewana3_3473 - hypothetical protein (RefSeq), at 4,166,237 to 4,166,905
_3473
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4162.894 kb on - strand, within Shewana3_3471 at 4163.068 kb on + strand, within Shewana3_3471 at 4163.093 kb on - strand, within Shewana3_3471 at 4163.116 kb on - strand, within Shewana3_3471 at 4163.133 kb on + strand, within Shewana3_3471 at 4163.320 kb on + strand, within Shewana3_3471 at 4163.535 kb on + strand at 4163.580 kb on + strand at 4163.645 kb on - strand at 4163.684 kb on - strand at 4163.771 kb on - strand at 4163.776 kb on - strand at 4163.781 kb on - strand at 4163.781 kb on - strand at 4163.819 kb on + strand at 4163.825 kb on - strand at 4163.846 kb on + strand at 4163.846 kb on + strand at 4163.914 kb on - strand at 4164.261 kb on + strand, within Shewana3_3472 at 4164.358 kb on + strand, within Shewana3_3472 at 4164.364 kb on - strand, within Shewana3_3472 at 4164.439 kb on - strand, within Shewana3_3472 at 4164.455 kb on - strand, within Shewana3_3472 at 4164.507 kb on - strand, within Shewana3_3472 at 4164.643 kb on + strand, within Shewana3_3472 at 4164.652 kb on - strand, within Shewana3_3472 at 4164.687 kb on - strand, within Shewana3_3472 at 4164.712 kb on + strand, within Shewana3_3472 at 4164.720 kb on + strand, within Shewana3_3472 at 4164.857 kb on + strand, within Shewana3_3472 at 4164.869 kb on + strand, within Shewana3_3472 at 4164.877 kb on - strand, within Shewana3_3472 at 4164.887 kb on + strand, within Shewana3_3472 at 4164.923 kb on - strand, within Shewana3_3472 at 4164.951 kb on + strand, within Shewana3_3472 at 4164.956 kb on - strand, within Shewana3_3472 at 4165.012 kb on + strand, within Shewana3_3472 at 4165.012 kb on + strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.277 kb on - strand, within Shewana3_3472 at 4165.334 kb on - strand, within Shewana3_3472 at 4165.344 kb on - strand, within Shewana3_3472 at 4165.396 kb on + strand, within Shewana3_3472 at 4165.500 kb on + strand, within Shewana3_3472 at 4165.627 kb on - strand at 4165.927 kb on + strand at 4166.015 kb on + strand at 4166.162 kb on + strand at 4166.170 kb on - strand at 4166.318 kb on - strand, within Shewana3_3473 at 4166.504 kb on + strand, within Shewana3_3473 at 4166.547 kb on + strand, within Shewana3_3473 at 4166.616 kb on - strand, within Shewana3_3473 at 4166.622 kb on + strand, within Shewana3_3473
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,162,894 - Shewana3_3471 0.13 +1.0 4,163,068 + Shewana3_3471 0.37 +0.1 4,163,093 - Shewana3_3471 0.40 +0.6 4,163,116 - Shewana3_3471 0.43 +0.4 4,163,133 + Shewana3_3471 0.46 +0.1 4,163,320 + Shewana3_3471 0.71 +0.8 4,163,535 + +0.4 4,163,580 + -1.3 4,163,645 - +0.5 4,163,684 - +0.3 4,163,771 - -1.3 4,163,776 - -1.5 4,163,781 - +0.0 4,163,781 - -0.4 4,163,819 + -0.6 4,163,825 - +0.2 4,163,846 + -1.5 4,163,846 + -2.2 4,163,914 - -1.7 4,164,261 + Shewana3_3472 0.23 -1.8 4,164,358 + Shewana3_3472 0.28 -2.6 4,164,364 - Shewana3_3472 0.28 -2.4 4,164,439 - Shewana3_3472 0.32 -1.4 4,164,455 - Shewana3_3472 0.33 -2.2 4,164,507 - Shewana3_3472 0.36 -2.1 4,164,643 + Shewana3_3472 0.42 -1.9 4,164,652 - Shewana3_3472 0.43 -2.8 4,164,687 - Shewana3_3472 0.45 -4.1 4,164,712 + Shewana3_3472 0.46 -3.8 4,164,720 + Shewana3_3472 0.46 -2.4 4,164,857 + Shewana3_3472 0.53 -1.6 4,164,869 + Shewana3_3472 0.54 -0.9 4,164,877 - Shewana3_3472 0.54 -2.5 4,164,887 + Shewana3_3472 0.55 -2.6 4,164,923 - Shewana3_3472 0.57 -1.6 4,164,951 + Shewana3_3472 0.58 -2.0 4,164,956 - Shewana3_3472 0.58 -2.0 4,165,012 + Shewana3_3472 0.61 -2.1 4,165,012 + Shewana3_3472 0.61 -2.0 4,165,020 - Shewana3_3472 0.62 -2.4 4,165,020 - Shewana3_3472 0.62 -2.9 4,165,020 - Shewana3_3472 0.62 -0.8 4,165,114 - Shewana3_3472 0.66 -5.5 4,165,114 - Shewana3_3472 0.66 -3.5 4,165,114 - Shewana3_3472 0.66 -2.3 4,165,277 - Shewana3_3472 0.75 -1.9 4,165,334 - Shewana3_3472 0.78 -2.4 4,165,344 - Shewana3_3472 0.78 -2.5 4,165,396 + Shewana3_3472 0.81 -3.0 4,165,500 + Shewana3_3472 0.86 -2.7 4,165,627 - -3.1 4,165,927 + -1.6 4,166,015 + -2.4 4,166,162 + -1.0 4,166,170 - +0.3 4,166,318 - Shewana3_3473 0.12 +0.0 4,166,504 + Shewana3_3473 0.40 +0.9 4,166,547 + Shewana3_3473 0.46 +0.9 4,166,616 - Shewana3_3473 0.57 +0.3 4,166,622 + Shewana3_3473 0.58 -2.1
Or see this region's nucleotide sequence