Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3425

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3423 and Shewana3_3424 are separated by 234 nucleotidesShewana3_3424 and Shewana3_3425 are separated by 1 nucleotidesShewana3_3425 and Shewana3_3426 overlap by 10 nucleotidesShewana3_3426 and Shewana3_3427 are separated by 2 nucleotidesShewana3_3427 and Shewana3_3428 are separated by 15 nucleotides Shewana3_3423: Shewana3_3423 - hypothetical protein (RefSeq), at 4,100,456 to 4,101,706 _3423 Shewana3_3424: Shewana3_3424 - methylation site containing protein (RefSeq), at 4,101,941 to 4,102,312 _3424 Shewana3_3425: Shewana3_3425 - methylation site containing protein (RefSeq), at 4,102,314 to 4,102,748 _3425 Shewana3_3426: Shewana3_3426 - prepilin-type cleavage/methylation-like protein (RefSeq), at 4,102,739 to 4,103,146 _3426 Shewana3_3427: Shewana3_3427 - prepilin-type cleavage/methylation-like protein (RefSeq), at 4,103,149 to 4,103,691 _3427 Shewana3_3428: Shewana3_3428 - hypothetical protein (RefSeq), at 4,103,707 to 4,105,332 _3428 Position (kb) 4102 4103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4101.419 kb on + strand, within Shewana3_3423at 4101.734 kb on - strandat 4101.907 kb on + strandat 4101.960 kb on + strandat 4101.968 kb on - strandat 4102.137 kb on - strand, within Shewana3_3424at 4102.137 kb on - strand, within Shewana3_3424at 4102.335 kb on + strandat 4102.345 kb on - strandat 4102.941 kb on + strand, within Shewana3_3426at 4103.023 kb on - strand, within Shewana3_3426at 4103.259 kb on + strand, within Shewana3_3427at 4103.297 kb on - strand, within Shewana3_3427at 4103.313 kb on + strand, within Shewana3_3427at 4103.491 kb on - strand, within Shewana3_3427at 4103.521 kb on - strand, within Shewana3_3427at 4103.651 kb on - strandat 4103.728 kb on - strandat 4103.733 kb on - strandat 4103.733 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
4,101,419 + Shewana3_3423 0.77 +0.6
4,101,734 - +0.3
4,101,907 + +0.2
4,101,960 + +0.0
4,101,968 - +0.1
4,102,137 - Shewana3_3424 0.53 -1.8
4,102,137 - Shewana3_3424 0.53 -4.3
4,102,335 + -1.0
4,102,345 - -1.4
4,102,941 + Shewana3_3426 0.50 -1.2
4,103,023 - Shewana3_3426 0.70 +0.1
4,103,259 + Shewana3_3427 0.20 -1.1
4,103,297 - Shewana3_3427 0.27 +0.0
4,103,313 + Shewana3_3427 0.30 +0.7
4,103,491 - Shewana3_3427 0.63 -1.6
4,103,521 - Shewana3_3427 0.69 +0.1
4,103,651 - +0.6
4,103,728 - -0.3
4,103,733 - +0.5
4,103,733 - -0.2

Or see this region's nucleotide sequence