Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3415

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3414 and Shewana3_3415 are separated by 365 nucleotidesShewana3_3415 and Shewana3_3416 are separated by 155 nucleotides Shewana3_3414: Shewana3_3414 - LuxR family transcriptional regulator (RefSeq), at 4,084,416 to 4,085,081 _3414 Shewana3_3415: Shewana3_3415 - hypothetical protein (RefSeq), at 4,085,447 to 4,086,055 _3415 Shewana3_3416: Shewana3_3416 - D-3-phosphoglycerate dehydrogenase (RefSeq), at 4,086,211 to 4,087,440 _3416 Position (kb) 4085 4086 4087Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4084.469 kb on - strandat 4084.544 kb on + strand, within Shewana3_3414at 4084.552 kb on - strand, within Shewana3_3414at 4084.612 kb on - strand, within Shewana3_3414at 4084.905 kb on + strand, within Shewana3_3414at 4085.316 kb on + strandat 4085.324 kb on - strandat 4085.445 kb on + strandat 4085.447 kb on - strandat 4085.447 kb on - strandat 4085.453 kb on - strandat 4085.488 kb on - strandat 4085.590 kb on - strand, within Shewana3_3415at 4085.798 kb on + strand, within Shewana3_3415at 4085.803 kb on + strand, within Shewana3_3415at 4085.832 kb on + strand, within Shewana3_3415at 4085.845 kb on - strand, within Shewana3_3415at 4086.016 kb on - strandat 4086.150 kb on - strandat 4086.682 kb on + strand, within Shewana3_3416at 4086.965 kb on + strand, within Shewana3_3416at 4086.975 kb on + strand, within Shewana3_3416at 4086.989 kb on - strand, within Shewana3_3416

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,084,469 - -2.0
4,084,544 + Shewana3_3414 0.19 -1.4
4,084,552 - Shewana3_3414 0.20 +0.1
4,084,612 - Shewana3_3414 0.29 -1.4
4,084,905 + Shewana3_3414 0.73 +0.4
4,085,316 + -0.0
4,085,324 - -0.2
4,085,445 + -1.6
4,085,447 - +0.3
4,085,447 - +0.1
4,085,453 - -1.3
4,085,488 - -1.4
4,085,590 - Shewana3_3415 0.23 -0.9
4,085,798 + Shewana3_3415 0.58 +0.0
4,085,803 + Shewana3_3415 0.58 -0.5
4,085,832 + Shewana3_3415 0.63 +1.1
4,085,845 - Shewana3_3415 0.65 -1.1
4,086,016 - -1.3
4,086,150 - -6.2
4,086,682 + Shewana3_3416 0.38 -7.0
4,086,965 + Shewana3_3416 0.61 -6.0
4,086,975 + Shewana3_3416 0.62 -6.3
4,086,989 - Shewana3_3416 0.63 -5.4

Or see this region's nucleotide sequence