Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3297

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlysS and Shewana3_3297 are separated by 29 nucleotidesShewana3_3297 and Shewana3_3298 are separated by 567 nucleotides Shewana3_3296: lysS - lysyl-tRNA synthetase (RefSeq), at 3,944,815 to 3,946,317 lysS Shewana3_3297: Shewana3_3297 - peptide chain release factor 2 (RefSeq), at 3,946,347 to 3,947,405 _3297 Shewana3_3298: Shewana3_3298 - formate dehydrogenase, alpha subunit (RefSeq), at 3,947,973 to 3,952,271 _3298 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -1 0 1at 3947.580 kb on - strandat 3947.626 kb on - strandat 3947.911 kb on + strandat 3947.912 kb on + strandat 3947.912 kb on + strandat 3948.025 kb on + strandat 3948.142 kb on + strandat 3948.145 kb on - strandat 3948.181 kb on + strandat 3948.189 kb on - strandat 3948.189 kb on - strandat 3948.320 kb on + strandat 3948.356 kb on + strandat 3948.374 kb on - strandat 3948.374 kb on - strandat 3948.380 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,947,580 - +0.6
3,947,626 - -0.2
3,947,911 + +0.3
3,947,912 + +0.5
3,947,912 + +0.0
3,948,025 + +0.6
3,948,142 + -0.0
3,948,145 - -0.2
3,948,181 + -0.2
3,948,189 - +0.3
3,948,189 - -1.0
3,948,320 + +0.7
3,948,356 + +0.4
3,948,374 - -1.4
3,948,374 - +0.3
3,948,380 + +0.2

Or see this region's nucleotide sequence