Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3274

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3273 and Shewana3_3274 are separated by 148 nucleotidesShewana3_3274 and Shewana3_3275 are separated by 28 nucleotides Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681 _3273 Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465 _3274 Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119 _3275 Position (kb) 3913 3914 3915Strain fitness (log2 ratio) -2 -1 0 1at 3913.305 kb on - strand, within Shewana3_3273at 3913.371 kb on - strand, within Shewana3_3273at 3913.433 kb on + strand, within Shewana3_3273at 3913.438 kb on + strand, within Shewana3_3273at 3913.801 kb on + strandat 3913.828 kb on + strandat 3914.076 kb on - strand, within Shewana3_3274at 3914.153 kb on - strand, within Shewana3_3274at 3914.206 kb on + strand, within Shewana3_3274at 3914.426 kb on - strandat 3914.643 kb on + strandat 3914.651 kb on - strandat 3914.651 kb on - strandat 3915.019 kb on - strand, within Shewana3_3275at 3915.029 kb on - strand, within Shewana3_3275at 3915.029 kb on - strand, within Shewana3_3275at 3915.165 kb on - strand, within Shewana3_3275at 3915.204 kb on + strand, within Shewana3_3275at 3915.212 kb on - strand, within Shewana3_3275at 3915.212 kb on - strand, within Shewana3_3275at 3915.357 kb on - strand, within Shewana3_3275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,913,305 - Shewana3_3273 0.64 -0.5
3,913,371 - Shewana3_3273 0.70 +0.2
3,913,433 + Shewana3_3273 0.76 -1.3
3,913,438 + Shewana3_3273 0.76 -0.9
3,913,801 + +0.4
3,913,828 + -1.2
3,914,076 - Shewana3_3274 0.39 -2.0
3,914,153 - Shewana3_3274 0.51 -0.3
3,914,206 + Shewana3_3274 0.59 -1.9
3,914,426 - -0.2
3,914,643 + -0.4
3,914,651 - -1.1
3,914,651 - +0.2
3,915,019 - Shewana3_3275 0.32 +0.3
3,915,029 - Shewana3_3275 0.33 +0.1
3,915,029 - Shewana3_3275 0.33 +0.3
3,915,165 - Shewana3_3275 0.41 +0.0
3,915,204 + Shewana3_3275 0.44 +0.1
3,915,212 - Shewana3_3275 0.44 +0.1
3,915,212 - Shewana3_3275 0.44 +0.3
3,915,357 - Shewana3_3275 0.53 +0.5

Or see this region's nucleotide sequence