Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3193 and Shewana3_3194 are separated by 1 nucleotides Shewana3_3194 and Shewana3_3195 are separated by 500 nucleotides
Shewana3_3193: Shewana3_3193 - secretion protein HlyD family protein (RefSeq), at 3,831,240 to 3,832,385
_3193
Shewana3_3194: Shewana3_3194 - hypothetical protein (RefSeq), at 3,832,387 to 3,832,803
_3194
Shewana3_3195: Shewana3_3195 - hypothetical protein (RefSeq), at 3,833,304 to 3,833,759
_3195
Position (kb)
3832
3833 Strain fitness (log2 ratio)
-1
0
1 at 3831.459 kb on - strand, within Shewana3_3193 at 3831.550 kb on - strand, within Shewana3_3193 at 3831.654 kb on - strand, within Shewana3_3193 at 3831.738 kb on - strand, within Shewana3_3193 at 3831.764 kb on - strand, within Shewana3_3193 at 3831.834 kb on - strand, within Shewana3_3193 at 3831.849 kb on - strand, within Shewana3_3193 at 3831.990 kb on + strand, within Shewana3_3193 at 3832.092 kb on - strand, within Shewana3_3193 at 3832.094 kb on + strand, within Shewana3_3193 at 3832.301 kb on - strand at 3832.512 kb on - strand, within Shewana3_3194 at 3832.677 kb on - strand, within Shewana3_3194 at 3832.897 kb on + strand at 3832.915 kb on - strand at 3833.091 kb on + strand at 3833.092 kb on + strand at 3833.122 kb on + strand at 3833.130 kb on - strand at 3833.257 kb on + strand at 3833.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,831,459 - Shewana3_3193 0.19 +0.4 3,831,550 - Shewana3_3193 0.27 +0.2 3,831,654 - Shewana3_3193 0.36 -1.2 3,831,738 - Shewana3_3193 0.43 -0.2 3,831,764 - Shewana3_3193 0.46 -0.1 3,831,834 - Shewana3_3193 0.52 +0.1 3,831,849 - Shewana3_3193 0.53 +0.5 3,831,990 + Shewana3_3193 0.65 -1.4 3,832,092 - Shewana3_3193 0.74 +0.4 3,832,094 + Shewana3_3193 0.75 +0.4 3,832,301 - -1.5 3,832,512 - Shewana3_3194 0.30 +0.6 3,832,677 - Shewana3_3194 0.70 +0.4 3,832,897 + -0.8 3,832,915 - +0.2 3,833,091 + +0.5 3,833,092 + +0.4 3,833,122 + -1.1 3,833,130 - +0.4 3,833,257 + -0.1 3,833,257 + +0.5
Or see this region's nucleotide sequence