Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3156

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3154 and Shewana3_3155 are separated by 255 nucleotidesShewana3_3155 and Shewana3_3156 overlap by 1 nucleotidesShewana3_3156 and Shewana3_3157 are separated by 152 nucleotides Shewana3_3154: Shewana3_3154 - putative sulfate transporter YchM (RefSeq), at 3,782,596 to 3,784,368 _3154 Shewana3_3155: Shewana3_3155 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 3,784,624 to 3,785,115 _3155 Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212 _3156 Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627 _3157 Position (kb) 3785 3786 3787Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3784.151 kb on + strand, within Shewana3_3154at 3784.182 kb on + strand, within Shewana3_3154at 3784.570 kb on - strandat 3784.570 kb on - strandat 3784.786 kb on - strand, within Shewana3_3155at 3784.870 kb on + strand, within Shewana3_3155at 3784.875 kb on + strand, within Shewana3_3155at 3784.878 kb on - strand, within Shewana3_3155at 3785.083 kb on + strandat 3785.083 kb on + strandat 3785.100 kb on + strandat 3785.175 kb on + strandat 3785.315 kb on - strand, within Shewana3_3156at 3785.677 kb on + strand, within Shewana3_3156at 3785.797 kb on - strand, within Shewana3_3156at 3785.880 kb on - strand, within Shewana3_3156at 3786.019 kb on + strand, within Shewana3_3156at 3786.019 kb on + strand, within Shewana3_3156at 3786.027 kb on - strand, within Shewana3_3156at 3786.027 kb on - strand, within Shewana3_3156at 3786.601 kb on - strand, within Shewana3_3157at 3786.694 kb on - strand, within Shewana3_3157at 3786.699 kb on - strand, within Shewana3_3157at 3786.756 kb on + strand, within Shewana3_3157at 3786.756 kb on + strand, within Shewana3_3157at 3786.764 kb on - strand, within Shewana3_3157at 3786.924 kb on - strand, within Shewana3_3157at 3786.969 kb on + strand, within Shewana3_3157at 3787.093 kb on + strand, within Shewana3_3157

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,784,151 + Shewana3_3154 0.88 +0.4
3,784,182 + Shewana3_3154 0.89 -5.5
3,784,570 - -7.7
3,784,570 - -5.4
3,784,786 - Shewana3_3155 0.33 -6.1
3,784,870 + Shewana3_3155 0.50 -6.5
3,784,875 + Shewana3_3155 0.51 -7.2
3,784,878 - Shewana3_3155 0.52 -3.4
3,785,083 + -3.9
3,785,083 + -6.0
3,785,100 + -6.3
3,785,175 + -5.0
3,785,315 - Shewana3_3156 0.18 -2.7
3,785,677 + Shewana3_3156 0.51 -5.4
3,785,797 - Shewana3_3156 0.62 -5.8
3,785,880 - Shewana3_3156 0.70 -6.3
3,786,019 + Shewana3_3156 0.82 -6.6
3,786,019 + Shewana3_3156 0.82 -7.3
3,786,027 - Shewana3_3156 0.83 -6.2
3,786,027 - Shewana3_3156 0.83 -1.9
3,786,601 - Shewana3_3157 0.19 +0.6
3,786,694 - Shewana3_3157 0.26 +0.4
3,786,699 - Shewana3_3157 0.26 -0.2
3,786,756 + Shewana3_3157 0.31 +0.4
3,786,756 + Shewana3_3157 0.31 +0.6
3,786,764 - Shewana3_3157 0.32 +1.0
3,786,924 - Shewana3_3157 0.44 -0.4
3,786,969 + Shewana3_3157 0.48 -0.8
3,787,093 + Shewana3_3157 0.58 -1.2

Or see this region's nucleotide sequence