Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3154 and Shewana3_3155 are separated by 255 nucleotides Shewana3_3155 and Shewana3_3156 overlap by 1 nucleotides Shewana3_3156 and Shewana3_3157 are separated by 152 nucleotides
Shewana3_3154: Shewana3_3154 - putative sulfate transporter YchM (RefSeq), at 3,782,596 to 3,784,368
_3154
Shewana3_3155: Shewana3_3155 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 3,784,624 to 3,785,115
_3155
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627
_3157
Position (kb)
3785
3786
3787 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3784.151 kb on + strand, within Shewana3_3154 at 3784.182 kb on + strand, within Shewana3_3154 at 3784.570 kb on - strand at 3784.570 kb on - strand at 3784.786 kb on - strand, within Shewana3_3155 at 3784.870 kb on + strand, within Shewana3_3155 at 3784.875 kb on + strand, within Shewana3_3155 at 3784.878 kb on - strand, within Shewana3_3155 at 3785.083 kb on + strand at 3785.083 kb on + strand at 3785.100 kb on + strand at 3785.175 kb on + strand at 3785.315 kb on - strand, within Shewana3_3156 at 3785.677 kb on + strand, within Shewana3_3156 at 3785.797 kb on - strand, within Shewana3_3156 at 3785.880 kb on - strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.601 kb on - strand, within Shewana3_3157 at 3786.694 kb on - strand, within Shewana3_3157 at 3786.699 kb on - strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.764 kb on - strand, within Shewana3_3157 at 3786.924 kb on - strand, within Shewana3_3157 at 3786.969 kb on + strand, within Shewana3_3157 at 3787.093 kb on + strand, within Shewana3_3157
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,784,151 + Shewana3_3154 0.88 +0.4 3,784,182 + Shewana3_3154 0.89 -5.5 3,784,570 - -7.7 3,784,570 - -5.4 3,784,786 - Shewana3_3155 0.33 -6.1 3,784,870 + Shewana3_3155 0.50 -6.5 3,784,875 + Shewana3_3155 0.51 -7.2 3,784,878 - Shewana3_3155 0.52 -3.4 3,785,083 + -3.9 3,785,083 + -6.0 3,785,100 + -6.3 3,785,175 + -5.0 3,785,315 - Shewana3_3156 0.18 -2.7 3,785,677 + Shewana3_3156 0.51 -5.4 3,785,797 - Shewana3_3156 0.62 -5.8 3,785,880 - Shewana3_3156 0.70 -6.3 3,786,019 + Shewana3_3156 0.82 -6.6 3,786,019 + Shewana3_3156 0.82 -7.3 3,786,027 - Shewana3_3156 0.83 -6.2 3,786,027 - Shewana3_3156 0.83 -1.9 3,786,601 - Shewana3_3157 0.19 +0.6 3,786,694 - Shewana3_3157 0.26 +0.4 3,786,699 - Shewana3_3157 0.26 -0.2 3,786,756 + Shewana3_3157 0.31 +0.4 3,786,756 + Shewana3_3157 0.31 +0.6 3,786,764 - Shewana3_3157 0.32 +1.0 3,786,924 - Shewana3_3157 0.44 -0.4 3,786,969 + Shewana3_3157 0.48 -0.8 3,787,093 + Shewana3_3157 0.58 -1.2
Or see this region's nucleotide sequence