Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3111

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3110 and Shewana3_3111 are separated by 339 nucleotidesShewana3_3111 and Shewana3_3112 are separated by 138 nucleotides Shewana3_3110: Shewana3_3110 - N-acetylglucosamine transporter nagP (from data), at 3,729,588 to 3,730,886 _3110 Shewana3_3111: Shewana3_3111 - transmembrane glucosamine N-acetyltransferase NagX (from data), at 3,731,226 to 3,732,413 _3111 Shewana3_3112: Shewana3_3112 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 3,732,552 to 3,733,688 _3112 Position (kb) 3731 3732 3733Strain fitness (log2 ratio) -3 -2 -1 0 1at 3730.387 kb on - strand, within Shewana3_3110at 3730.387 kb on - strand, within Shewana3_3110at 3730.387 kb on - strand, within Shewana3_3110at 3730.530 kb on + strand, within Shewana3_3110at 3730.548 kb on + strand, within Shewana3_3110at 3730.727 kb on + strand, within Shewana3_3110at 3731.257 kb on + strandat 3731.265 kb on - strandat 3731.282 kb on - strandat 3731.305 kb on + strandat 3731.313 kb on - strandat 3731.313 kb on - strandat 3731.362 kb on + strand, within Shewana3_3111at 3731.533 kb on + strand, within Shewana3_3111at 3731.555 kb on + strand, within Shewana3_3111at 3731.585 kb on - strand, within Shewana3_3111at 3731.629 kb on - strand, within Shewana3_3111at 3731.629 kb on - strand, within Shewana3_3111at 3731.688 kb on + strand, within Shewana3_3111at 3731.772 kb on + strand, within Shewana3_3111at 3731.782 kb on + strand, within Shewana3_3111at 3731.841 kb on + strand, within Shewana3_3111at 3731.841 kb on + strand, within Shewana3_3111at 3732.076 kb on + strand, within Shewana3_3111at 3732.185 kb on - strand, within Shewana3_3111at 3732.423 kb on - strandat 3732.606 kb on - strandat 3732.628 kb on - strandat 3732.745 kb on - strand, within Shewana3_3112at 3732.745 kb on - strand, within Shewana3_3112at 3732.745 kb on - strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.776 kb on - strand, within Shewana3_3112at 3732.843 kb on - strand, within Shewana3_3112at 3732.853 kb on - strand, within Shewana3_3112at 3732.864 kb on + strand, within Shewana3_3112at 3733.127 kb on + strand, within Shewana3_3112at 3733.127 kb on + strand, within Shewana3_3112at 3733.261 kb on - strand, within Shewana3_3112at 3733.351 kb on - strand, within Shewana3_3112

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,730,387 - Shewana3_3110 0.62 +0.2
3,730,387 - Shewana3_3110 0.62 +0.4
3,730,387 - Shewana3_3110 0.62 +0.3
3,730,530 + Shewana3_3110 0.73 -0.0
3,730,548 + Shewana3_3110 0.74 -3.3
3,730,727 + Shewana3_3110 0.88 -0.1
3,731,257 + +0.3
3,731,265 - -0.9
3,731,282 - -0.1
3,731,305 + -2.8
3,731,313 - +0.0
3,731,313 - +0.2
3,731,362 + Shewana3_3111 0.11 +1.0
3,731,533 + Shewana3_3111 0.26 +0.7
3,731,555 + Shewana3_3111 0.28 -1.3
3,731,585 - Shewana3_3111 0.30 -0.0
3,731,629 - Shewana3_3111 0.34 +0.1
3,731,629 - Shewana3_3111 0.34 +0.1
3,731,688 + Shewana3_3111 0.39 +0.3
3,731,772 + Shewana3_3111 0.46 -0.0
3,731,782 + Shewana3_3111 0.47 +0.2
3,731,841 + Shewana3_3111 0.52 +0.6
3,731,841 + Shewana3_3111 0.52 -0.6
3,732,076 + Shewana3_3111 0.72 +0.3
3,732,185 - Shewana3_3111 0.81 +0.3
3,732,423 - -1.5
3,732,606 - +0.5
3,732,628 - +0.1
3,732,745 - Shewana3_3112 0.17 +0.4
3,732,745 - Shewana3_3112 0.17 -1.6
3,732,745 - Shewana3_3112 0.17 +0.2
3,732,747 + Shewana3_3112 0.17 -1.5
3,732,747 + Shewana3_3112 0.17 -0.1
3,732,747 + Shewana3_3112 0.17 -0.7
3,732,776 - Shewana3_3112 0.20 +0.0
3,732,843 - Shewana3_3112 0.26 -1.8
3,732,853 - Shewana3_3112 0.26 -1.1
3,732,864 + Shewana3_3112 0.27 -0.7
3,733,127 + Shewana3_3112 0.51 -0.1
3,733,127 + Shewana3_3112 0.51 +0.1
3,733,261 - Shewana3_3112 0.62 +0.1
3,733,351 - Shewana3_3112 0.70 +0.1

Or see this region's nucleotide sequence