Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3110 and Shewana3_3111 are separated by 339 nucleotides Shewana3_3111 and Shewana3_3112 are separated by 138 nucleotides
Shewana3_3110: Shewana3_3110 - N-acetylglucosamine transporter nagP (from data) , at 3,729,588 to 3,730,886
_3110
Shewana3_3111: Shewana3_3111 - transmembrane glucosamine N-acetyltransferase NagX (from data) , at 3,731,226 to 3,732,413
_3111
Shewana3_3112: Shewana3_3112 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) , at 3,732,552 to 3,733,688
_3112
Position (kb)
3731
3732
3733 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.530 kb on + strand, within Shewana3_3110 at 3730.548 kb on + strand, within Shewana3_3110 at 3730.727 kb on + strand, within Shewana3_3110 at 3731.257 kb on + strand at 3731.265 kb on - strand at 3731.282 kb on - strand at 3731.305 kb on + strand at 3731.313 kb on - strand at 3731.313 kb on - strand at 3731.362 kb on + strand, within Shewana3_3111 at 3731.533 kb on + strand, within Shewana3_3111 at 3731.555 kb on + strand, within Shewana3_3111 at 3731.585 kb on - strand, within Shewana3_3111 at 3731.629 kb on - strand, within Shewana3_3111 at 3731.629 kb on - strand, within Shewana3_3111 at 3731.688 kb on + strand, within Shewana3_3111 at 3731.772 kb on + strand, within Shewana3_3111 at 3731.782 kb on + strand, within Shewana3_3111 at 3731.841 kb on + strand, within Shewana3_3111 at 3731.841 kb on + strand, within Shewana3_3111 at 3732.076 kb on + strand, within Shewana3_3111 at 3732.185 kb on - strand, within Shewana3_3111 at 3732.423 kb on - strand at 3732.606 kb on - strand at 3732.628 kb on - strand at 3732.745 kb on - strand, within Shewana3_3112 at 3732.745 kb on - strand, within Shewana3_3112 at 3732.745 kb on - strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.776 kb on - strand, within Shewana3_3112 at 3732.843 kb on - strand, within Shewana3_3112 at 3732.853 kb on - strand, within Shewana3_3112 at 3732.864 kb on + strand, within Shewana3_3112 at 3733.127 kb on + strand, within Shewana3_3112 at 3733.127 kb on + strand, within Shewana3_3112 at 3733.261 kb on - strand, within Shewana3_3112 at 3733.351 kb on - strand, within Shewana3_3112
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,730,387 - Shewana3_3110 0.62 +0.2 3,730,387 - Shewana3_3110 0.62 +0.4 3,730,387 - Shewana3_3110 0.62 +0.3 3,730,530 + Shewana3_3110 0.73 -0.0 3,730,548 + Shewana3_3110 0.74 -3.3 3,730,727 + Shewana3_3110 0.88 -0.1 3,731,257 + +0.3 3,731,265 - -0.9 3,731,282 - -0.1 3,731,305 + -2.8 3,731,313 - +0.0 3,731,313 - +0.2 3,731,362 + Shewana3_3111 0.11 +1.0 3,731,533 + Shewana3_3111 0.26 +0.7 3,731,555 + Shewana3_3111 0.28 -1.3 3,731,585 - Shewana3_3111 0.30 -0.0 3,731,629 - Shewana3_3111 0.34 +0.1 3,731,629 - Shewana3_3111 0.34 +0.1 3,731,688 + Shewana3_3111 0.39 +0.3 3,731,772 + Shewana3_3111 0.46 -0.0 3,731,782 + Shewana3_3111 0.47 +0.2 3,731,841 + Shewana3_3111 0.52 +0.6 3,731,841 + Shewana3_3111 0.52 -0.6 3,732,076 + Shewana3_3111 0.72 +0.3 3,732,185 - Shewana3_3111 0.81 +0.3 3,732,423 - -1.5 3,732,606 - +0.5 3,732,628 - +0.1 3,732,745 - Shewana3_3112 0.17 +0.4 3,732,745 - Shewana3_3112 0.17 -1.6 3,732,745 - Shewana3_3112 0.17 +0.2 3,732,747 + Shewana3_3112 0.17 -1.5 3,732,747 + Shewana3_3112 0.17 -0.1 3,732,747 + Shewana3_3112 0.17 -0.7 3,732,776 - Shewana3_3112 0.20 +0.0 3,732,843 - Shewana3_3112 0.26 -1.8 3,732,853 - Shewana3_3112 0.26 -1.1 3,732,864 + Shewana3_3112 0.27 -0.7 3,733,127 + Shewana3_3112 0.51 -0.1 3,733,127 + Shewana3_3112 0.51 +0.1 3,733,261 - Shewana3_3112 0.62 +0.1 3,733,351 - Shewana3_3112 0.70 +0.1
Or see this region's nucleotide sequence