Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2989 and Shewana3_2990 are separated by 312 nucleotides Shewana3_2990 and Shewana3_2991 are separated by 289 nucleotides
Shewana3_2989: Shewana3_2989 - hypothetical protein (RefSeq), at 3,594,549 to 3,595,844
_2989
Shewana3_2990: Shewana3_2990 - hypothetical protein (RefSeq), at 3,596,157 to 3,597,044
_2990
Shewana3_2991: Shewana3_2991 - redoxin domain-containing protein (RefSeq), at 3,597,334 to 3,597,981
_2991
Position (kb)
3596
3597
3598 Strain fitness (log2 ratio)
-2
-1
0
1 at 3595.195 kb on - strand, within Shewana3_2989 at 3595.233 kb on - strand, within Shewana3_2989 at 3595.249 kb on + strand, within Shewana3_2989 at 3595.415 kb on - strand, within Shewana3_2989 at 3595.475 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3596.060 kb on + strand at 3596.073 kb on + strand at 3596.163 kb on - strand at 3596.299 kb on - strand, within Shewana3_2990 at 3596.454 kb on - strand, within Shewana3_2990 at 3596.571 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.845 kb on - strand, within Shewana3_2990 at 3596.895 kb on + strand, within Shewana3_2990 at 3596.915 kb on + strand, within Shewana3_2990 at 3596.915 kb on + strand, within Shewana3_2990 at 3597.086 kb on + strand at 3597.179 kb on - strand at 3597.262 kb on - strand at 3597.262 kb on - strand at 3597.337 kb on - strand at 3597.342 kb on - strand at 3597.349 kb on - strand at 3597.353 kb on + strand at 3597.441 kb on + strand, within Shewana3_2991 at 3597.449 kb on - strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.745 kb on - strand, within Shewana3_2991 at 3597.804 kb on - strand, within Shewana3_2991 at 3597.929 kb on - strand at 3597.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,595,195 - Shewana3_2989 0.50 -1.6 3,595,233 - Shewana3_2989 0.53 -1.2 3,595,249 + Shewana3_2989 0.54 -0.3 3,595,415 - Shewana3_2989 0.67 +0.3 3,595,475 - Shewana3_2989 0.71 +0.1 3,595,591 - Shewana3_2989 0.80 -0.0 3,595,591 - Shewana3_2989 0.80 +0.2 3,595,644 - Shewana3_2989 0.84 +0.3 3,595,644 - Shewana3_2989 0.84 -1.2 3,596,060 + -1.2 3,596,073 + +0.1 3,596,163 - -0.9 3,596,299 - Shewana3_2990 0.16 -2.1 3,596,454 - Shewana3_2990 0.33 +0.2 3,596,571 + Shewana3_2990 0.47 +0.8 3,596,837 + Shewana3_2990 0.77 +1.1 3,596,837 + Shewana3_2990 0.77 +0.7 3,596,837 + Shewana3_2990 0.77 +0.7 3,596,845 - Shewana3_2990 0.77 +0.6 3,596,895 + Shewana3_2990 0.83 +0.6 3,596,915 + Shewana3_2990 0.85 +0.0 3,596,915 + Shewana3_2990 0.85 +0.4 3,597,086 + +0.2 3,597,179 - +0.4 3,597,262 - -1.2 3,597,262 - +0.7 3,597,337 - +1.0 3,597,342 - -1.5 3,597,349 - -1.0 3,597,353 + +0.6 3,597,441 + Shewana3_2991 0.17 +0.3 3,597,449 - Shewana3_2991 0.18 -1.7 3,597,588 + Shewana3_2991 0.39 -1.4 3,597,588 + Shewana3_2991 0.39 -1.0 3,597,588 + Shewana3_2991 0.39 -1.0 3,597,745 - Shewana3_2991 0.63 -1.2 3,597,804 - Shewana3_2991 0.73 +0.4 3,597,929 - -0.5 3,597,951 - -0.0
Or see this region's nucleotide sequence