Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2974 and Shewana3_2975 are separated by 68 nucleotides Shewana3_2975 and Shewana3_2976 are separated by 237 nucleotides Shewana3_2976 and Shewana3_2977 are separated by 114 nucleotides
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Shewana3_2975: Shewana3_2975 - hypothetical protein (RefSeq), at 3,576,515 to 3,577,429
_2975
Shewana3_2976: Shewana3_2976 - hypothetical protein (RefSeq), at 3,577,667 to 3,578,161
_2976
Shewana3_2977: Shewana3_2977 - CMP/dCMP deaminase, zinc-binding (RefSeq), at 3,578,276 to 3,578,713
_2977
Position (kb)
3576
3577
3578 Strain fitness (log2 ratio)
-2
-1
0
1 at 3575.527 kb on + strand, within Shewana3_2974 at 3575.567 kb on - strand, within Shewana3_2974 at 3575.576 kb on + strand, within Shewana3_2974 at 3575.618 kb on + strand, within Shewana3_2974 at 3575.708 kb on - strand, within Shewana3_2974 at 3575.822 kb on + strand, within Shewana3_2974 at 3575.830 kb on - strand, within Shewana3_2974 at 3576.209 kb on - strand, within Shewana3_2974 at 3576.316 kb on + strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.463 kb on + strand at 3576.493 kb on - strand at 3577.622 kb on + strand at 3577.636 kb on + strand at 3577.644 kb on - strand at 3577.738 kb on - strand, within Shewana3_2976 at 3577.827 kb on + strand, within Shewana3_2976 at 3577.834 kb on + strand, within Shewana3_2976 at 3577.839 kb on - strand, within Shewana3_2976 at 3578.009 kb on - strand, within Shewana3_2976 at 3578.079 kb on - strand, within Shewana3_2976 at 3578.256 kb on + strand at 3578.256 kb on + strand at 3578.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,575,527 + Shewana3_2974 0.47 -0.9 3,575,567 - Shewana3_2974 0.49 -0.4 3,575,576 + Shewana3_2974 0.50 +0.6 3,575,618 + Shewana3_2974 0.52 -0.8 3,575,708 - Shewana3_2974 0.57 -2.4 3,575,822 + Shewana3_2974 0.64 -0.1 3,575,830 - Shewana3_2974 0.64 +0.4 3,576,209 - Shewana3_2974 0.86 -1.3 3,576,316 + +0.1 3,576,324 - +0.4 3,576,324 - +0.4 3,576,324 - -1.3 3,576,463 + +0.0 3,576,493 - -0.2 3,577,622 + -0.5 3,577,636 + +0.2 3,577,644 - -1.8 3,577,738 - Shewana3_2976 0.14 +0.1 3,577,827 + Shewana3_2976 0.32 +0.6 3,577,834 + Shewana3_2976 0.34 +0.6 3,577,839 - Shewana3_2976 0.35 +0.4 3,578,009 - Shewana3_2976 0.69 +0.5 3,578,079 - Shewana3_2976 0.83 +0.7 3,578,256 + +0.1 3,578,256 + -1.2 3,578,316 - +0.5
Or see this region's nucleotide sequence