Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2973

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2972 and Shewana3_2973 are separated by 41 nucleotidesShewana3_2973 and Shewana3_2974 are separated by 77 nucleotides Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916 _2972 Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638 _2973 Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446 _2974 Position (kb) 3573 3574 3575Strain fitness (log2 ratio) -1 0 1at 3573.281 kb on + strand, within Shewana3_2972at 3573.402 kb on + strand, within Shewana3_2972at 3573.971 kb on + strandat 3574.070 kb on + strand, within Shewana3_2973at 3574.070 kb on + strand, within Shewana3_2973at 3574.086 kb on + strand, within Shewana3_2973at 3574.661 kb on + strandat 3574.661 kb on + strandat 3574.760 kb on - strandat 3574.824 kb on + strandat 3574.911 kb on + strand, within Shewana3_2974at 3574.919 kb on - strand, within Shewana3_2974at 3575.022 kb on + strand, within Shewana3_2974at 3575.347 kb on + strand, within Shewana3_2974at 3575.473 kb on + strand, within Shewana3_2974at 3575.473 kb on + strand, within Shewana3_2974at 3575.481 kb on - strand, within Shewana3_2974at 3575.481 kb on - strand, within Shewana3_2974at 3575.481 kb on - strand, within Shewana3_2974at 3575.527 kb on + strand, within Shewana3_2974at 3575.567 kb on - strand, within Shewana3_2974at 3575.576 kb on + strand, within Shewana3_2974at 3575.618 kb on + strand, within Shewana3_2974

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,573,281 + Shewana3_2972 0.50 -1.2
3,573,402 + Shewana3_2972 0.60 +0.3
3,573,971 + -1.4
3,574,070 + Shewana3_2973 0.16 -1.1
3,574,070 + Shewana3_2973 0.16 -1.0
3,574,086 + Shewana3_2973 0.19 -1.7
3,574,661 + +0.6
3,574,661 + -0.3
3,574,760 - -0.2
3,574,824 + +0.5
3,574,911 + Shewana3_2974 0.11 -1.1
3,574,919 - Shewana3_2974 0.12 -0.4
3,575,022 + Shewana3_2974 0.18 +1.5
3,575,347 + Shewana3_2974 0.36 -1.0
3,575,473 + Shewana3_2974 0.44 +0.2
3,575,473 + Shewana3_2974 0.44 -0.7
3,575,481 - Shewana3_2974 0.44 +0.4
3,575,481 - Shewana3_2974 0.44 -1.5
3,575,481 - Shewana3_2974 0.44 +0.2
3,575,527 + Shewana3_2974 0.47 -0.9
3,575,567 - Shewana3_2974 0.49 -0.4
3,575,576 + Shewana3_2974 0.50 +0.6
3,575,618 + Shewana3_2974 0.52 -0.8

Or see this region's nucleotide sequence