Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2862 and Shewana3_2863 are separated by 230 nucleotides Shewana3_2863 and Shewana3_2864 are separated by 62 nucleotides Shewana3_2864 and Shewana3_2865 are separated by 155 nucleotides
Shewana3_2862: Shewana3_2862 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,421,055 to 3,423,268
_2862
Shewana3_2863: Shewana3_2863 - hypothetical protein (RefSeq), at 3,423,499 to 3,424,206
_2863
Shewana3_2864: Shewana3_2864 - TetR family transcriptional regulator (RefSeq), at 3,424,269 to 3,424,880
_2864
Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662
_2865
Position (kb)
3423
3424
3425 Strain fitness (log2 ratio)
-2
-1
0
1 at 3422.511 kb on - strand, within Shewana3_2862 at 3422.832 kb on + strand, within Shewana3_2862 at 3423.288 kb on - strand at 3423.435 kb on + strand at 3423.440 kb on + strand at 3423.512 kb on + strand at 3423.630 kb on + strand, within Shewana3_2863 at 3423.638 kb on + strand, within Shewana3_2863 at 3423.646 kb on - strand, within Shewana3_2863 at 3423.972 kb on - strand, within Shewana3_2863 at 3424.144 kb on - strand at 3424.379 kb on - strand, within Shewana3_2864 at 3424.443 kb on - strand, within Shewana3_2864 at 3424.526 kb on - strand, within Shewana3_2864 at 3424.573 kb on + strand, within Shewana3_2864 at 3424.592 kb on - strand, within Shewana3_2864 at 3424.810 kb on - strand, within Shewana3_2864 at 3425.067 kb on + strand at 3425.197 kb on + strand, within Shewana3_2865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,422,511 - Shewana3_2862 0.66 +0.4 3,422,832 + Shewana3_2862 0.80 -0.0 3,423,288 - +0.2 3,423,435 + +0.2 3,423,440 + +0.9 3,423,512 + -1.3 3,423,630 + Shewana3_2863 0.19 -1.3 3,423,638 + Shewana3_2863 0.20 +0.7 3,423,646 - Shewana3_2863 0.21 -0.3 3,423,972 - Shewana3_2863 0.67 +0.0 3,424,144 - +0.1 3,424,379 - Shewana3_2864 0.18 -0.0 3,424,443 - Shewana3_2864 0.28 -1.5 3,424,526 - Shewana3_2864 0.42 -1.9 3,424,573 + Shewana3_2864 0.50 -0.5 3,424,592 - Shewana3_2864 0.53 -1.6 3,424,810 - Shewana3_2864 0.88 -0.0 3,425,067 + +0.3 3,425,197 + Shewana3_2865 0.26 +0.3
Or see this region's nucleotide sequence