Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2863

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2862 and Shewana3_2863 are separated by 230 nucleotidesShewana3_2863 and Shewana3_2864 are separated by 62 nucleotidesShewana3_2864 and Shewana3_2865 are separated by 155 nucleotides Shewana3_2862: Shewana3_2862 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,421,055 to 3,423,268 _2862 Shewana3_2863: Shewana3_2863 - hypothetical protein (RefSeq), at 3,423,499 to 3,424,206 _2863 Shewana3_2864: Shewana3_2864 - TetR family transcriptional regulator (RefSeq), at 3,424,269 to 3,424,880 _2864 Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662 _2865 Position (kb) 3423 3424 3425Strain fitness (log2 ratio) -2 -1 0 1at 3422.511 kb on - strand, within Shewana3_2862at 3422.832 kb on + strand, within Shewana3_2862at 3423.288 kb on - strandat 3423.435 kb on + strandat 3423.440 kb on + strandat 3423.512 kb on + strandat 3423.630 kb on + strand, within Shewana3_2863at 3423.638 kb on + strand, within Shewana3_2863at 3423.646 kb on - strand, within Shewana3_2863at 3423.972 kb on - strand, within Shewana3_2863at 3424.144 kb on - strandat 3424.379 kb on - strand, within Shewana3_2864at 3424.443 kb on - strand, within Shewana3_2864at 3424.526 kb on - strand, within Shewana3_2864at 3424.573 kb on + strand, within Shewana3_2864at 3424.592 kb on - strand, within Shewana3_2864at 3424.810 kb on - strand, within Shewana3_2864at 3425.067 kb on + strandat 3425.197 kb on + strand, within Shewana3_2865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,422,511 - Shewana3_2862 0.66 +0.4
3,422,832 + Shewana3_2862 0.80 -0.0
3,423,288 - +0.2
3,423,435 + +0.2
3,423,440 + +0.9
3,423,512 + -1.3
3,423,630 + Shewana3_2863 0.19 -1.3
3,423,638 + Shewana3_2863 0.20 +0.7
3,423,646 - Shewana3_2863 0.21 -0.3
3,423,972 - Shewana3_2863 0.67 +0.0
3,424,144 - +0.1
3,424,379 - Shewana3_2864 0.18 -0.0
3,424,443 - Shewana3_2864 0.28 -1.5
3,424,526 - Shewana3_2864 0.42 -1.9
3,424,573 + Shewana3_2864 0.50 -0.5
3,424,592 - Shewana3_2864 0.53 -1.6
3,424,810 - Shewana3_2864 0.88 -0.0
3,425,067 + +0.3
3,425,197 + Shewana3_2865 0.26 +0.3

Or see this region's nucleotide sequence