Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2860 and Shewana3_2861 are separated by 81 nucleotides Shewana3_2861 and Shewana3_2862 are separated by 134 nucleotides
Shewana3_2860: Shewana3_2860 - major facilitator transporter (RefSeq), at 3,419,079 to 3,420,275
_2860
Shewana3_2861: Shewana3_2861 - PhnA protein (RefSeq), at 3,420,357 to 3,420,920
_2861
Shewana3_2862: Shewana3_2862 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,421,055 to 3,423,268
_2862
Position (kb) 3420
3421 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 3419.390 kb on + strand, within Shewana3_2860 at 3419.393 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.411 kb on - strand, within Shewana3_2860 at 3419.427 kb on - strand, within Shewana3_2860 at 3419.429 kb on + strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.502 kb on - strand, within Shewana3_2860 at 3419.580 kb on + strand, within Shewana3_2860 at 3419.607 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.822 kb on - strand, within Shewana3_2860 at 3419.829 kb on - strand, within Shewana3_2860 at 3420.103 kb on - strand, within Shewana3_2860 at 3420.103 kb on - strand, within Shewana3_2860 at 3420.240 kb on + strand at 3420.241 kb on + strand at 3420.241 kb on + strand at 3420.254 kb on - strand at 3420.332 kb on + strand at 3420.340 kb on + strand at 3420.355 kb on + strand at 3420.558 kb on + strand, within Shewana3_2861 at 3420.696 kb on + strand, within Shewana3_2861 at 3420.873 kb on + strand at 3420.873 kb on + strand at 3421.068 kb on + strand at 3421.165 kb on + strand at 3421.173 kb on - strand at 3421.241 kb on - strand at 3421.335 kb on + strand, within Shewana3_2862 at 3421.469 kb on + strand, within Shewana3_2862 at 3421.524 kb on - strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.677 kb on - strand, within Shewana3_2862 at 3421.677 kb on - strand, within Shewana3_2862 at 3421.856 kb on - strand, within Shewana3_2862 at 3421.868 kb on - strand, within Shewana3_2862
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,419,390 + Shewana3_2860 0.26 +2.6 3,419,393 - Shewana3_2860 0.26 +0.1 3,419,403 - Shewana3_2860 0.27 -1.1 3,419,403 - Shewana3_2860 0.27 -3.0 3,419,411 - Shewana3_2860 0.28 +0.1 3,419,427 - Shewana3_2860 0.29 +0.2 3,419,429 + Shewana3_2860 0.29 -1.8 3,419,437 - Shewana3_2860 0.30 -1.1 3,419,437 - Shewana3_2860 0.30 -1.9 3,419,502 - Shewana3_2860 0.35 +0.4 3,419,580 + Shewana3_2860 0.42 -6.2 3,419,607 - Shewana3_2860 0.44 +0.6 3,419,775 - Shewana3_2860 0.58 -0.1 3,419,775 - Shewana3_2860 0.58 +0.1 3,419,814 + Shewana3_2860 0.61 +0.3 3,419,814 + Shewana3_2860 0.61 +0.1 3,419,822 - Shewana3_2860 0.62 -0.1 3,419,829 - Shewana3_2860 0.63 +0.8 3,420,103 - Shewana3_2860 0.86 -1.0 3,420,103 - Shewana3_2860 0.86 +0.3 3,420,240 + -0.0 3,420,241 + -1.1 3,420,241 + -0.2 3,420,254 - +0.4 3,420,332 + +0.1 3,420,340 + -2.2 3,420,355 + +0.6 3,420,558 + Shewana3_2861 0.36 +0.2 3,420,696 + Shewana3_2861 0.60 +0.8 3,420,873 + -1.8 3,420,873 + +0.6 3,421,068 + -0.2 3,421,165 + +0.3 3,421,173 - -0.4 3,421,241 - -0.2 3,421,335 + Shewana3_2862 0.13 +0.2 3,421,469 + Shewana3_2862 0.19 +0.4 3,421,524 - Shewana3_2862 0.21 +0.3 3,421,669 + Shewana3_2862 0.28 +0.6 3,421,669 + Shewana3_2862 0.28 +0.2 3,421,669 + Shewana3_2862 0.28 -0.4 3,421,677 - Shewana3_2862 0.28 -1.3 3,421,677 - Shewana3_2862 0.28 +0.3 3,421,856 - Shewana3_2862 0.36 -1.3 3,421,868 - Shewana3_2862 0.37 -0.5
Or see this region's nucleotide sequence