Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2853 and Shewana3_2854 are separated by 255 nucleotides Shewana3_2854 and Shewana3_2855 overlap by 4 nucleotides Shewana3_2855 and Shewana3_2856 are separated by 132 nucleotides Shewana3_2856 and Shewana3_2857 are separated by 4 nucleotides
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369
_2854
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607
_2856
Shewana3_2857: Shewana3_2857 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,416,612 to 3,417,238
_2857
Position (kb)
3415
3416 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3414.372 kb on - strand, within Shewana3_2853 at 3414.451 kb on - strand, within Shewana3_2853 at 3414.660 kb on - strand, within Shewana3_2853 at 3414.737 kb on + strand, within Shewana3_2853 at 3414.826 kb on + strand at 3414.845 kb on - strand at 3414.937 kb on - strand at 3414.962 kb on + strand at 3415.157 kb on + strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.479 kb on + strand, within Shewana3_2855 at 3415.849 kb on - strand at 3415.859 kb on - strand at 3415.875 kb on + strand at 3416.146 kb on - strand, within Shewana3_2856 at 3416.149 kb on - strand, within Shewana3_2856 at 3416.284 kb on - strand, within Shewana3_2856 at 3416.381 kb on + strand, within Shewana3_2856 at 3416.449 kb on - strand, within Shewana3_2856 at 3416.669 kb on + strand at 3416.716 kb on + strand, within Shewana3_2857 at 3416.828 kb on + strand, within Shewana3_2857
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,414,372 - Shewana3_2853 0.38 -0.7 3,414,451 - Shewana3_2853 0.48 -2.8 3,414,660 - Shewana3_2853 0.74 -2.5 3,414,737 + Shewana3_2853 0.83 -0.8 3,414,826 + +0.3 3,414,845 - -1.2 3,414,937 - +0.6 3,414,962 + -2.2 3,415,157 + Shewana3_2854 0.12 -1.4 3,415,324 - Shewana3_2854 0.81 +0.6 3,415,324 - Shewana3_2854 0.81 +1.2 3,415,479 + Shewana3_2855 0.23 +0.2 3,415,849 - +0.3 3,415,859 - -0.4 3,415,875 + -0.1 3,416,146 - Shewana3_2856 0.24 +0.8 3,416,149 - Shewana3_2856 0.25 +2.3 3,416,284 - Shewana3_2856 0.47 +0.1 3,416,381 + Shewana3_2856 0.63 +0.2 3,416,449 - Shewana3_2856 0.74 -0.9 3,416,669 + +0.8 3,416,716 + Shewana3_2857 0.17 +0.2 3,416,828 + Shewana3_2857 0.34 +1.1
Or see this region's nucleotide sequence