Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2793 and Shewana3_2794 are separated by 37 nucleotides Shewana3_2794 and Shewana3_2795 are separated by 74 nucleotides Shewana3_2795 and Shewana3_2796 are separated by 184 nucleotides
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Shewana3_2794: Shewana3_2794 - putative hydrolase (RefSeq), at 3,333,270 to 3,334,028
_2794
Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351
_2795
Shewana3_2796: Shewana3_2796 - hypothetical protein (RefSeq), at 3,337,536 to 3,339,359
_2796
Position (kb)
3334
3335
3336
3337
3338 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3333.137 kb on + strand at 3333.156 kb on + strand at 3333.185 kb on + strand at 3333.321 kb on - strand at 3333.337 kb on + strand at 3333.469 kb on - strand, within Shewana3_2794 at 3334.009 kb on - strand at 3334.023 kb on - strand at 3334.043 kb on - strand at 3334.043 kb on - strand at 3334.068 kb on - strand at 3334.389 kb on - strand at 3334.389 kb on - strand at 3334.795 kb on + strand, within Shewana3_2795 at 3334.887 kb on + strand, within Shewana3_2795 at 3335.041 kb on + strand, within Shewana3_2795 at 3335.501 kb on - strand, within Shewana3_2795 at 3335.604 kb on - strand, within Shewana3_2795 at 3335.647 kb on - strand, within Shewana3_2795 at 3335.935 kb on - strand, within Shewana3_2795 at 3336.085 kb on + strand, within Shewana3_2795 at 3336.085 kb on + strand, within Shewana3_2795 at 3336.093 kb on - strand, within Shewana3_2795 at 3336.093 kb on - strand, within Shewana3_2795 at 3336.161 kb on - strand, within Shewana3_2795 at 3336.245 kb on - strand, within Shewana3_2795 at 3336.275 kb on - strand, within Shewana3_2795 at 3336.379 kb on + strand, within Shewana3_2795 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.696 kb on - strand, within Shewana3_2795 at 3336.789 kb on - strand, within Shewana3_2795 at 3337.014 kb on - strand, within Shewana3_2795 at 3337.184 kb on + strand at 3337.189 kb on + strand at 3337.290 kb on + strand at 3337.541 kb on - strand at 3337.714 kb on - strand at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.872 kb on - strand, within Shewana3_2796 at 3337.875 kb on - strand, within Shewana3_2796 at 3338.008 kb on + strand, within Shewana3_2796 at 3338.023 kb on - strand, within Shewana3_2796 at 3338.040 kb on - strand, within Shewana3_2796 at 3338.258 kb on - strand, within Shewana3_2796 at 3338.298 kb on + strand, within Shewana3_2796
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,333,137 + +0.4 3,333,156 + +0.2 3,333,185 + +0.5 3,333,321 - -0.1 3,333,337 + +0.2 3,333,469 - Shewana3_2794 0.26 -1.0 3,334,009 - +0.1 3,334,023 - +0.1 3,334,043 - +0.2 3,334,043 - +0.1 3,334,068 - -1.7 3,334,389 - -0.2 3,334,389 - -1.6 3,334,795 + Shewana3_2795 0.21 -0.1 3,334,887 + Shewana3_2795 0.24 -0.5 3,335,041 + Shewana3_2795 0.29 -0.1 3,335,501 - Shewana3_2795 0.43 -1.9 3,335,604 - Shewana3_2795 0.46 +0.3 3,335,647 - Shewana3_2795 0.48 -2.5 3,335,935 - Shewana3_2795 0.56 -0.1 3,336,085 + Shewana3_2795 0.61 -0.1 3,336,085 + Shewana3_2795 0.61 -0.0 3,336,093 - Shewana3_2795 0.61 -0.1 3,336,093 - Shewana3_2795 0.61 +2.1 3,336,161 - Shewana3_2795 0.63 -1.5 3,336,245 - Shewana3_2795 0.66 +0.6 3,336,275 - Shewana3_2795 0.67 -1.7 3,336,379 + Shewana3_2795 0.70 +0.1 3,336,644 - Shewana3_2795 0.78 -1.0 3,336,644 - Shewana3_2795 0.78 -0.7 3,336,696 - Shewana3_2795 0.80 -0.4 3,336,789 - Shewana3_2795 0.83 +0.0 3,337,014 - Shewana3_2795 0.90 +0.3 3,337,184 + -0.4 3,337,189 + -2.7 3,337,290 + -0.0 3,337,541 - -0.2 3,337,714 - +0.2 3,337,864 + Shewana3_2796 0.18 +0.3 3,337,864 + Shewana3_2796 0.18 -0.1 3,337,864 + Shewana3_2796 0.18 -1.2 3,337,872 - Shewana3_2796 0.18 +0.7 3,337,875 - Shewana3_2796 0.19 +0.2 3,338,008 + Shewana3_2796 0.26 +0.2 3,338,023 - Shewana3_2796 0.27 +0.4 3,338,040 - Shewana3_2796 0.28 -1.4 3,338,258 - Shewana3_2796 0.40 +0.3 3,338,298 + Shewana3_2796 0.42 +0.1
Or see this region's nucleotide sequence