Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2616

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2614 and Shewana3_2615 are separated by 54 nucleotidesShewana3_2615 and Shewana3_2616 are separated by 22 nucleotidesShewana3_2616 and Shewana3_2617 are separated by 70 nucleotidesShewana3_2617 and Shewana3_2618 are separated by 73 nucleotides Shewana3_2614: Shewana3_2614 - LysR family transcriptional regulator (RefSeq), at 3,120,963 to 3,121,925 _2614 Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366 _2615 Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619 _2616 Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226 _2617 Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578 _2618 Position (kb) 3122 3123Strain fitness (log2 ratio) -1 0 1at 3121.452 kb on - strand, within Shewana3_2614at 3121.462 kb on + strand, within Shewana3_2614at 3121.727 kb on - strand, within Shewana3_2614at 3121.776 kb on - strand, within Shewana3_2614at 3121.788 kb on + strand, within Shewana3_2614at 3121.796 kb on - strand, within Shewana3_2614at 3121.796 kb on - strand, within Shewana3_2614at 3121.796 kb on - strand, within Shewana3_2614at 3121.832 kb on - strandat 3121.908 kb on + strandat 3122.141 kb on - strand, within Shewana3_2615at 3122.301 kb on - strand, within Shewana3_2615at 3122.550 kb on - strand, within Shewana3_2616at 3122.833 kb on - strand, within Shewana3_2617at 3122.873 kb on + strand, within Shewana3_2617at 3122.890 kb on + strand, within Shewana3_2617at 3122.920 kb on - strand, within Shewana3_2617at 3122.921 kb on - strand, within Shewana3_2617at 3122.921 kb on - strand, within Shewana3_2617at 3123.067 kb on - strand, within Shewana3_2617at 3123.069 kb on + strand, within Shewana3_2617at 3123.079 kb on + strand, within Shewana3_2617at 3123.151 kb on - strand, within Shewana3_2617at 3123.173 kb on + strandat 3123.196 kb on + strandat 3123.204 kb on - strandat 3123.343 kb on + strand, within Shewana3_2618at 3123.507 kb on + strand, within Shewana3_2618at 3123.523 kb on + strand, within Shewana3_2618at 3123.531 kb on - strand, within Shewana3_2618at 3123.536 kb on - strand, within Shewana3_2618

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,121,452 - Shewana3_2614 0.51 +0.1
3,121,462 + Shewana3_2614 0.52 -1.0
3,121,727 - Shewana3_2614 0.79 +0.2
3,121,776 - Shewana3_2614 0.84 -0.6
3,121,788 + Shewana3_2614 0.86 -0.1
3,121,796 - Shewana3_2614 0.87 -0.6
3,121,796 - Shewana3_2614 0.87 +0.2
3,121,796 - Shewana3_2614 0.87 -1.1
3,121,832 - +0.6
3,121,908 + +0.9
3,122,141 - Shewana3_2615 0.42 -0.2
3,122,301 - Shewana3_2615 0.83 -0.4
3,122,550 - Shewana3_2616 0.70 -1.6
3,122,833 - Shewana3_2617 0.27 -0.1
3,122,873 + Shewana3_2617 0.34 -1.2
3,122,890 + Shewana3_2617 0.37 -0.9
3,122,920 - Shewana3_2617 0.43 +0.1
3,122,921 - Shewana3_2617 0.43 +0.3
3,122,921 - Shewana3_2617 0.43 +0.3
3,123,067 - Shewana3_2617 0.70 -0.6
3,123,069 + Shewana3_2617 0.71 +0.3
3,123,079 + Shewana3_2617 0.72 +0.6
3,123,151 - Shewana3_2617 0.86 -1.5
3,123,173 + -1.0
3,123,196 + +0.2
3,123,204 - -1.3
3,123,343 + Shewana3_2618 0.15 +0.6
3,123,507 + Shewana3_2618 0.74 +0.4
3,123,523 + Shewana3_2618 0.80 -0.3
3,123,531 - Shewana3_2618 0.83 +0.4
3,123,536 - Shewana3_2618 0.85 +0.1

Or see this region's nucleotide sequence