Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2484

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2483 and Shewana3_2484 are separated by 183 nucleotidesShewana3_2484 and Shewana3_2485 are separated by 323 nucleotides Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840 _2483 Shewana3_2484: Shewana3_2484 - hexapaptide repeat-containing transferase (RefSeq), at 2,971,024 to 2,971,581 _2484 Shewana3_2485: Shewana3_2485 - lysine exporter protein LysE/YggA (RefSeq), at 2,971,905 to 2,972,528 _2485 Position (kb) 2971 2972Strain fitness (log2 ratio) -1 0 1at 2970.067 kb on + strand, within Shewana3_2483at 2970.094 kb on - strand, within Shewana3_2483at 2970.115 kb on - strand, within Shewana3_2483at 2970.146 kb on - strand, within Shewana3_2483at 2970.276 kb on - strand, within Shewana3_2483at 2970.286 kb on + strand, within Shewana3_2483at 2970.381 kb on - strand, within Shewana3_2483at 2970.490 kb on - strand, within Shewana3_2483at 2970.653 kb on - strand, within Shewana3_2483at 2970.779 kb on + strandat 2970.797 kb on - strandat 2970.852 kb on + strandat 2971.061 kb on - strandat 2971.272 kb on - strand, within Shewana3_2484at 2971.323 kb on + strand, within Shewana3_2484at 2971.407 kb on - strand, within Shewana3_2484at 2971.409 kb on + strand, within Shewana3_2484at 2971.758 kb on - strandat 2971.768 kb on + strandat 2971.787 kb on - strandat 2971.904 kb on - strandat 2971.904 kb on - strandat 2971.937 kb on - strandat 2971.973 kb on + strand, within Shewana3_2485at 2972.025 kb on - strand, within Shewana3_2485at 2972.103 kb on - strand, within Shewana3_2485at 2972.113 kb on - strand, within Shewana3_2485at 2972.113 kb on - strand, within Shewana3_2485at 2972.282 kb on + strand, within Shewana3_2485at 2972.282 kb on + strand, within Shewana3_2485at 2972.290 kb on - strand, within Shewana3_2485

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,970,067 + Shewana3_2483 0.45 -1.6
2,970,094 - Shewana3_2483 0.47 +0.2
2,970,115 - Shewana3_2483 0.48 -0.2
2,970,146 - Shewana3_2483 0.50 -1.2
2,970,276 - Shewana3_2483 0.60 -0.3
2,970,286 + Shewana3_2483 0.60 -0.1
2,970,381 - Shewana3_2483 0.67 +0.2
2,970,490 - Shewana3_2483 0.75 -1.6
2,970,653 - Shewana3_2483 0.87 -1.1
2,970,779 + +0.3
2,970,797 - -0.4
2,970,852 + +0.6
2,971,061 - -0.1
2,971,272 - Shewana3_2484 0.44 -0.3
2,971,323 + Shewana3_2484 0.54 +1.3
2,971,407 - Shewana3_2484 0.69 +0.4
2,971,409 + Shewana3_2484 0.69 +0.0
2,971,758 - +0.0
2,971,768 + +0.4
2,971,787 - +0.4
2,971,904 - +0.8
2,971,904 - +0.3
2,971,937 - -1.2
2,971,973 + Shewana3_2485 0.11 +0.7
2,972,025 - Shewana3_2485 0.19 +0.4
2,972,103 - Shewana3_2485 0.32 +0.6
2,972,113 - Shewana3_2485 0.33 +0.0
2,972,113 - Shewana3_2485 0.33 +0.3
2,972,282 + Shewana3_2485 0.60 +0.7
2,972,282 + Shewana3_2485 0.60 -1.3
2,972,290 - Shewana3_2485 0.62 +0.7

Or see this region's nucleotide sequence