Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2482

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2481 and Shewana3_2482 are separated by 113 nucleotidesShewana3_2482 and Shewana3_2483 are separated by 196 nucleotides Shewana3_2481: Shewana3_2481 - homogentisate 1,2-dioxygenase (RefSeq), at 2,966,926 to 2,968,086 _2481 Shewana3_2482: Shewana3_2482 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,968,200 to 2,969,240 _2482 Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840 _2483 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -2 -1 0 1at 2967.365 kb on + strand, within Shewana3_2481at 2967.391 kb on - strand, within Shewana3_2481at 2967.614 kb on + strand, within Shewana3_2481at 2967.636 kb on - strand, within Shewana3_2481at 2967.658 kb on + strand, within Shewana3_2481at 2967.750 kb on + strand, within Shewana3_2481at 2967.752 kb on + strand, within Shewana3_2481at 2967.760 kb on - strand, within Shewana3_2481at 2967.852 kb on + strand, within Shewana3_2481at 2967.860 kb on - strand, within Shewana3_2481at 2968.154 kb on + strandat 2968.482 kb on + strand, within Shewana3_2482at 2968.526 kb on + strand, within Shewana3_2482at 2968.534 kb on - strand, within Shewana3_2482at 2968.548 kb on + strand, within Shewana3_2482at 2968.800 kb on - strand, within Shewana3_2482at 2968.802 kb on + strand, within Shewana3_2482at 2968.842 kb on + strand, within Shewana3_2482at 2968.859 kb on + strand, within Shewana3_2482at 2969.055 kb on - strand, within Shewana3_2482at 2969.644 kb on - strand, within Shewana3_2483at 2969.682 kb on + strand, within Shewana3_2483at 2969.746 kb on + strand, within Shewana3_2483at 2969.846 kb on - strand, within Shewana3_2483at 2969.929 kb on + strand, within Shewana3_2483at 2969.958 kb on + strand, within Shewana3_2483at 2969.966 kb on - strand, within Shewana3_2483at 2970.007 kb on + strand, within Shewana3_2483at 2970.067 kb on + strand, within Shewana3_2483at 2970.094 kb on - strand, within Shewana3_2483at 2970.115 kb on - strand, within Shewana3_2483at 2970.146 kb on - strand, within Shewana3_2483

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
2,967,365 + Shewana3_2481 0.38 -0.2
2,967,391 - Shewana3_2481 0.40 -0.1
2,967,614 + Shewana3_2481 0.59 -0.9
2,967,636 - Shewana3_2481 0.61 +0.7
2,967,658 + Shewana3_2481 0.63 -1.0
2,967,750 + Shewana3_2481 0.71 -0.6
2,967,752 + Shewana3_2481 0.71 -1.2
2,967,760 - Shewana3_2481 0.72 +0.3
2,967,852 + Shewana3_2481 0.80 +1.0
2,967,860 - Shewana3_2481 0.80 +0.2
2,968,154 + -0.0
2,968,482 + Shewana3_2482 0.27 +0.7
2,968,526 + Shewana3_2482 0.31 -1.1
2,968,534 - Shewana3_2482 0.32 -0.8
2,968,548 + Shewana3_2482 0.33 +0.7
2,968,800 - Shewana3_2482 0.58 -1.9
2,968,802 + Shewana3_2482 0.58 -1.5
2,968,842 + Shewana3_2482 0.62 -0.6
2,968,859 + Shewana3_2482 0.63 -1.6
2,969,055 - Shewana3_2482 0.82 +0.2
2,969,644 - Shewana3_2483 0.15 -0.7
2,969,682 + Shewana3_2483 0.17 +1.3
2,969,746 + Shewana3_2483 0.22 +0.6
2,969,846 - Shewana3_2483 0.29 +0.1
2,969,929 + Shewana3_2483 0.35 +0.2
2,969,958 + Shewana3_2483 0.37 +0.3
2,969,966 - Shewana3_2483 0.38 -1.0
2,970,007 + Shewana3_2483 0.41 -0.5
2,970,067 + Shewana3_2483 0.45 -1.6
2,970,094 - Shewana3_2483 0.47 +0.2
2,970,115 - Shewana3_2483 0.48 -0.2
2,970,146 - Shewana3_2483 0.50 -1.2

Or see this region's nucleotide sequence