Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2481 and Shewana3_2482 are separated by 113 nucleotides Shewana3_2482 and Shewana3_2483 are separated by 196 nucleotides
Shewana3_2481: Shewana3_2481 - homogentisate 1,2-dioxygenase (RefSeq), at 2,966,926 to 2,968,086
_2481
Shewana3_2482: Shewana3_2482 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,968,200 to 2,969,240
_2482
Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840
_2483
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-2
-1
0
1 at 2967.365 kb on + strand, within Shewana3_2481 at 2967.391 kb on - strand, within Shewana3_2481 at 2967.614 kb on + strand, within Shewana3_2481 at 2967.636 kb on - strand, within Shewana3_2481 at 2967.658 kb on + strand, within Shewana3_2481 at 2967.750 kb on + strand, within Shewana3_2481 at 2967.752 kb on + strand, within Shewana3_2481 at 2967.760 kb on - strand, within Shewana3_2481 at 2967.852 kb on + strand, within Shewana3_2481 at 2967.860 kb on - strand, within Shewana3_2481 at 2968.154 kb on + strand at 2968.482 kb on + strand, within Shewana3_2482 at 2968.526 kb on + strand, within Shewana3_2482 at 2968.534 kb on - strand, within Shewana3_2482 at 2968.548 kb on + strand, within Shewana3_2482 at 2968.800 kb on - strand, within Shewana3_2482 at 2968.802 kb on + strand, within Shewana3_2482 at 2968.842 kb on + strand, within Shewana3_2482 at 2968.859 kb on + strand, within Shewana3_2482 at 2969.055 kb on - strand, within Shewana3_2482 at 2969.644 kb on - strand, within Shewana3_2483 at 2969.682 kb on + strand, within Shewana3_2483 at 2969.746 kb on + strand, within Shewana3_2483 at 2969.846 kb on - strand, within Shewana3_2483 at 2969.929 kb on + strand, within Shewana3_2483 at 2969.958 kb on + strand, within Shewana3_2483 at 2969.966 kb on - strand, within Shewana3_2483 at 2970.007 kb on + strand, within Shewana3_2483 at 2970.067 kb on + strand, within Shewana3_2483 at 2970.094 kb on - strand, within Shewana3_2483 at 2970.115 kb on - strand, within Shewana3_2483 at 2970.146 kb on - strand, within Shewana3_2483
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,967,365 + Shewana3_2481 0.38 -0.2 2,967,391 - Shewana3_2481 0.40 -0.1 2,967,614 + Shewana3_2481 0.59 -0.9 2,967,636 - Shewana3_2481 0.61 +0.7 2,967,658 + Shewana3_2481 0.63 -1.0 2,967,750 + Shewana3_2481 0.71 -0.6 2,967,752 + Shewana3_2481 0.71 -1.2 2,967,760 - Shewana3_2481 0.72 +0.3 2,967,852 + Shewana3_2481 0.80 +1.0 2,967,860 - Shewana3_2481 0.80 +0.2 2,968,154 + -0.0 2,968,482 + Shewana3_2482 0.27 +0.7 2,968,526 + Shewana3_2482 0.31 -1.1 2,968,534 - Shewana3_2482 0.32 -0.8 2,968,548 + Shewana3_2482 0.33 +0.7 2,968,800 - Shewana3_2482 0.58 -1.9 2,968,802 + Shewana3_2482 0.58 -1.5 2,968,842 + Shewana3_2482 0.62 -0.6 2,968,859 + Shewana3_2482 0.63 -1.6 2,969,055 - Shewana3_2482 0.82 +0.2 2,969,644 - Shewana3_2483 0.15 -0.7 2,969,682 + Shewana3_2483 0.17 +1.3 2,969,746 + Shewana3_2483 0.22 +0.6 2,969,846 - Shewana3_2483 0.29 +0.1 2,969,929 + Shewana3_2483 0.35 +0.2 2,969,958 + Shewana3_2483 0.37 +0.3 2,969,966 - Shewana3_2483 0.38 -1.0 2,970,007 + Shewana3_2483 0.41 -0.5 2,970,067 + Shewana3_2483 0.45 -1.6 2,970,094 - Shewana3_2483 0.47 +0.2 2,970,115 - Shewana3_2483 0.48 -0.2 2,970,146 - Shewana3_2483 0.50 -1.2
Or see this region's nucleotide sequence