Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2460 and Shewana3_2461 are separated by 57 nucleotides Shewana3_2461 and Shewana3_2462 are separated by 179 nucleotides Shewana3_2462 and Shewana3_2463 are separated by 212 nucleotides Shewana3_2463 and Shewana3_2464 are separated by 96 nucleotides
Shewana3_2460: Shewana3_2460 - hypothetical protein (RefSeq), at 2,949,777 to 2,950,136
_2460
Shewana3_2461: Shewana3_2461 - hypothetical protein (RefSeq), at 2,950,194 to 2,950,835
_2461
Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959
_2462
Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786
_2463
Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440
_2464
Position (kb)
2951
2952 Strain fitness (log2 ratio)
-1
0
1 at 2950.015 kb on + strand, within Shewana3_2460 at 2950.078 kb on + strand, within Shewana3_2460 at 2950.120 kb on + strand at 2950.491 kb on + strand, within Shewana3_2461 at 2950.493 kb on + strand, within Shewana3_2461 at 2950.572 kb on - strand, within Shewana3_2461 at 2950.572 kb on - strand at 2950.974 kb on - strand at 2951.060 kb on - strand at 2951.211 kb on - strand, within Shewana3_2462 at 2951.596 kb on + strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.825 kb on + strand, within Shewana3_2462 at 2952.327 kb on - strand, within Shewana3_2463 at 2952.359 kb on + strand, within Shewana3_2463 at 2952.503 kb on - strand, within Shewana3_2463 at 2952.807 kb on + strand at 2952.822 kb on - strand at 2952.959 kb on + strand, within Shewana3_2464
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,950,015 + Shewana3_2460 0.66 -0.0 2,950,078 + Shewana3_2460 0.84 -1.2 2,950,120 + -0.7 2,950,491 + Shewana3_2461 0.46 +0.4 2,950,493 + Shewana3_2461 0.47 -0.9 2,950,572 - Shewana3_2461 0.59 +0.9 2,950,572 - -0.5 2,950,974 - +0.5 2,951,060 - +0.1 2,951,211 - Shewana3_2462 0.21 -0.4 2,951,596 + Shewana3_2462 0.61 +0.7 2,951,659 - Shewana3_2462 0.68 +0.2 2,951,659 - Shewana3_2462 0.68 +0.2 2,951,659 - Shewana3_2462 0.68 +0.3 2,951,825 + Shewana3_2462 0.86 +1.1 2,952,327 - Shewana3_2463 0.25 -0.2 2,952,359 + Shewana3_2463 0.30 +0.2 2,952,503 - Shewana3_2463 0.54 -1.1 2,952,807 + +0.4 2,952,822 - +0.1 2,952,959 + Shewana3_2464 0.14 -0.2
Or see this region's nucleotide sequence