Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2462

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2460 and Shewana3_2461 are separated by 57 nucleotidesShewana3_2461 and Shewana3_2462 are separated by 179 nucleotidesShewana3_2462 and Shewana3_2463 are separated by 212 nucleotidesShewana3_2463 and Shewana3_2464 are separated by 96 nucleotides Shewana3_2460: Shewana3_2460 - hypothetical protein (RefSeq), at 2,949,777 to 2,950,136 _2460 Shewana3_2461: Shewana3_2461 - hypothetical protein (RefSeq), at 2,950,194 to 2,950,835 _2461 Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959 _2462 Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786 _2463 Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440 _2464 Position (kb) 2951 2952Strain fitness (log2 ratio) -1 0 1at 2950.015 kb on + strand, within Shewana3_2460at 2950.078 kb on + strand, within Shewana3_2460at 2950.120 kb on + strandat 2950.491 kb on + strand, within Shewana3_2461at 2950.493 kb on + strand, within Shewana3_2461at 2950.572 kb on - strand, within Shewana3_2461at 2950.572 kb on - strandat 2950.974 kb on - strandat 2951.060 kb on - strandat 2951.211 kb on - strand, within Shewana3_2462at 2951.596 kb on + strand, within Shewana3_2462at 2951.659 kb on - strand, within Shewana3_2462at 2951.659 kb on - strand, within Shewana3_2462at 2951.659 kb on - strand, within Shewana3_2462at 2951.825 kb on + strand, within Shewana3_2462at 2952.327 kb on - strand, within Shewana3_2463at 2952.359 kb on + strand, within Shewana3_2463at 2952.503 kb on - strand, within Shewana3_2463at 2952.807 kb on + strandat 2952.822 kb on - strandat 2952.959 kb on + strand, within Shewana3_2464

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,950,015 + Shewana3_2460 0.66 -0.0
2,950,078 + Shewana3_2460 0.84 -1.2
2,950,120 + -0.7
2,950,491 + Shewana3_2461 0.46 +0.4
2,950,493 + Shewana3_2461 0.47 -0.9
2,950,572 - Shewana3_2461 0.59 +0.9
2,950,572 - -0.5
2,950,974 - +0.5
2,951,060 - +0.1
2,951,211 - Shewana3_2462 0.21 -0.4
2,951,596 + Shewana3_2462 0.61 +0.7
2,951,659 - Shewana3_2462 0.68 +0.2
2,951,659 - Shewana3_2462 0.68 +0.2
2,951,659 - Shewana3_2462 0.68 +0.3
2,951,825 + Shewana3_2462 0.86 +1.1
2,952,327 - Shewana3_2463 0.25 -0.2
2,952,359 + Shewana3_2463 0.30 +0.2
2,952,503 - Shewana3_2463 0.54 -1.1
2,952,807 + +0.4
2,952,822 - +0.1
2,952,959 + Shewana3_2464 0.14 -0.2

Or see this region's nucleotide sequence