Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2411

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2410 and Shewana3_2411 are separated by 45 nucleotidesShewana3_2411 and Shewana3_2412 are separated by 231 nucleotidesShewana3_2412 and Shewana3_2413 are separated by 32 nucleotides Shewana3_2410: Shewana3_2410 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,888,800 to 2,891,055 _2410 Shewana3_2411: Shewana3_2411 - OmpA/MotB domain-containing protein (RefSeq), at 2,891,101 to 2,891,895 _2411 Shewana3_2412: Shewana3_2412 - two component transcriptional regulator (RefSeq), at 2,892,127 to 2,892,819 _2412 Shewana3_2413: Shewana3_2413 - ATPase domain-containing protein (RefSeq), at 2,892,852 to 2,895,011 _2413 Position (kb) 2891 2892Strain fitness (log2 ratio) -1 0 1at 2890.320 kb on - strand, within Shewana3_2410at 2890.402 kb on - strand, within Shewana3_2410at 2890.618 kb on + strand, within Shewana3_2410at 2890.762 kb on - strand, within Shewana3_2410at 2890.767 kb on - strand, within Shewana3_2410at 2890.957 kb on + strandat 2890.957 kb on + strandat 2891.154 kb on - strandat 2891.159 kb on - strandat 2891.221 kb on + strand, within Shewana3_2411at 2891.374 kb on + strand, within Shewana3_2411at 2891.461 kb on - strand, within Shewana3_2411at 2892.216 kb on - strand, within Shewana3_2412at 2892.319 kb on - strand, within Shewana3_2412at 2892.350 kb on - strand, within Shewana3_2412at 2892.457 kb on - strand, within Shewana3_2412at 2892.620 kb on - strand, within Shewana3_2412at 2892.670 kb on - strand, within Shewana3_2412at 2892.710 kb on - strand, within Shewana3_2412at 2892.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,890,320 - Shewana3_2410 0.67 +0.7
2,890,402 - Shewana3_2410 0.71 -1.2
2,890,618 + Shewana3_2410 0.81 +0.4
2,890,762 - Shewana3_2410 0.87 +0.5
2,890,767 - Shewana3_2410 0.87 +0.6
2,890,957 + -1.6
2,890,957 + -1.2
2,891,154 - -1.6
2,891,159 - +0.3
2,891,221 + Shewana3_2411 0.15 -1.2
2,891,374 + Shewana3_2411 0.34 -1.2
2,891,461 - Shewana3_2411 0.45 -0.8
2,892,216 - Shewana3_2412 0.13 +0.2
2,892,319 - Shewana3_2412 0.28 -0.4
2,892,350 - Shewana3_2412 0.32 +0.6
2,892,457 - Shewana3_2412 0.48 -1.3
2,892,620 - Shewana3_2412 0.71 -0.8
2,892,670 - Shewana3_2412 0.78 +0.3
2,892,710 - Shewana3_2412 0.84 +0.2
2,892,793 + +0.2

Or see this region's nucleotide sequence