Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2272

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntilvH and Shewana3_2271 are separated by 134 nucleotidesShewana3_2271 and Shewana3_2272 are separated by 304 nucleotidesShewana3_2272 and Shewana3_2273 are separated by 584 nucleotidesShewana3_2273 and Shewana3_2274 are separated by 68 nucleotides Shewana3_2270: ilvH - acetolactate synthase 3 regulatory subunit (RefSeq), at 2,734,769 to 2,735,263 ilvH Shewana3_2271: Shewana3_2271 - heat shock protein Hsp20 (RefSeq), at 2,735,398 to 2,735,841 _2271 Shewana3_2272: Shewana3_2272 - nucleoside diphosphate kinase (RefSeq), at 2,736,146 to 2,736,577 _2272 Shewana3_2273: Shewana3_2273 - hypothetical protein (RefSeq), at 2,737,162 to 2,737,359 _2273 Shewana3_2274: Shewana3_2274 - SSU ribosomal protein S6P modification protein (RefSeq), at 2,737,428 to 2,738,327 _2274 Position (kb) 2736 2737Strain fitness (log2 ratio) -2 -1 0 1at 2735.222 kb on + strandat 2736.120 kb on - strandat 2736.331 kb on - strand, within Shewana3_2272at 2736.908 kb on + strandat 2737.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,735,222 + -1.6
2,736,120 - +0.5
2,736,331 - Shewana3_2272 0.43 -0.3
2,736,908 + -1.8
2,737,404 + -0.7

Or see this region's nucleotide sequence