Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2165

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2163 and Shewana3_2164 are separated by 188 nucleotidesShewana3_2164 and Shewana3_2165 overlap by 4 nucleotidesShewana3_2165 and Shewana3_2166 are separated by 139 nucleotides Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797 _2163 Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705 _2164 Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307 _2165 Shewana3_2166: Shewana3_2166 - excinuclease ABC subunit B (RefSeq), at 2,594,447 to 2,596,468 _2166 Position (kb) 2593 2594 2595Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2592.920 kb on - strandat 2593.225 kb on - strand, within Shewana3_2164at 2593.278 kb on + strand, within Shewana3_2164at 2593.329 kb on - strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.558 kb on - strand, within Shewana3_2164at 2593.694 kb on + strandat 2593.773 kb on + strand, within Shewana3_2165at 2593.812 kb on + strand, within Shewana3_2165at 2593.858 kb on + strand, within Shewana3_2165at 2594.014 kb on - strand, within Shewana3_2165at 2594.045 kb on + strand, within Shewana3_2165at 2594.177 kb on - strandat 2594.378 kb on + strandat 2594.497 kb on - strandat 2594.573 kb on - strandat 2594.637 kb on + strandat 2594.699 kb on - strand, within Shewana3_2166at 2594.723 kb on - strand, within Shewana3_2166at 2594.763 kb on + strand, within Shewana3_2166at 2594.783 kb on - strand, within Shewana3_2166at 2594.941 kb on - strand, within Shewana3_2166at 2594.941 kb on - strand, within Shewana3_2166at 2595.013 kb on + strand, within Shewana3_2166at 2595.201 kb on - strand, within Shewana3_2166at 2595.263 kb on - strand, within Shewana3_2166

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,592,920 - -0.1
2,593,225 - Shewana3_2164 0.33 +2.1
2,593,278 + Shewana3_2164 0.41 -0.0
2,593,329 - Shewana3_2164 0.48 +1.9
2,593,550 + Shewana3_2164 0.78 +0.4
2,593,550 + Shewana3_2164 0.78 -0.6
2,593,550 + Shewana3_2164 0.78 -1.0
2,593,558 - Shewana3_2164 0.79 +1.7
2,593,694 + +0.4
2,593,773 + Shewana3_2165 0.12 +2.5
2,593,812 + Shewana3_2165 0.18 +4.0
2,593,858 + Shewana3_2165 0.26 +0.2
2,594,014 - Shewana3_2165 0.51 +1.4
2,594,045 + Shewana3_2165 0.57 +1.7
2,594,177 - +1.2
2,594,378 + +0.3
2,594,497 - -1.5
2,594,573 - +0.5
2,594,637 + -0.3
2,594,699 - Shewana3_2166 0.12 -0.3
2,594,723 - Shewana3_2166 0.14 -1.4
2,594,763 + Shewana3_2166 0.16 -1.6
2,594,783 - Shewana3_2166 0.17 -2.3
2,594,941 - Shewana3_2166 0.24 -1.0
2,594,941 - Shewana3_2166 0.24 -1.7
2,595,013 + Shewana3_2166 0.28 -0.2
2,595,201 - Shewana3_2166 0.37 -0.7
2,595,263 - Shewana3_2166 0.40 -0.2

Or see this region's nucleotide sequence