Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1977

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1975 and cmk are separated by 183 nucleotidescmk and rpsA are separated by 102 nucleotidesrpsA and ihfB are separated by 73 nucleotidesihfB and Shewana3_1979 are separated by 123 nucleotidesShewana3_1979 and Shewana3_1980 are separated by 1 nucleotides Shewana3_1975: Shewana3_1975 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,353,638 to 2,354,918 _1975 Shewana3_1976: cmk - cytidylate kinase (RefSeq), at 2,355,102 to 2,355,794 cmk Shewana3_1977: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,355,897 to 2,357,564 rpsA Shewana3_1978: ihfB - integration host factor subunit beta (RefSeq), at 2,357,638 to 2,357,925 ihfB Shewana3_1979: Shewana3_1979 - hypothetical protein (RefSeq), at 2,358,049 to 2,358,324 _1979 Shewana3_1980: Shewana3_1980 - tetratricopeptide repeat protein (RefSeq), at 2,358,326 to 2,359,486 _1980 Position (kb) 2355 2356 2357 2358Strain fitness (log2 ratio) -1 0 1at 2355.021 kb on + strandat 2355.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,355,021 + -1.2
2,355,029 - -0.2

Or see this region's nucleotide sequence