Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1647 and Shewana3_1648 are separated by 47 nucleotides Shewana3_1648 and Shewana3_1649 are separated by 111 nucleotides Shewana3_1649 and Shewana3_1650 are separated by 112 nucleotides Shewana3_1650 and Shewana3_1651 are separated by 208 nucleotides
Shewana3_1647: Shewana3_1647 - hypothetical protein (RefSeq), at 1,939,133 to 1,939,513
_1647
Shewana3_1648: Shewana3_1648 - arsenate reductase (RefSeq), at 1,939,561 to 1,939,911
_1648
Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492
_1649
Shewana3_1650: Shewana3_1650 - SirA family protein (RefSeq), at 1,941,605 to 1,941,838
_1650
Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147
_1651
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-1
0
1 at 1939.078 kb on + strand at 1939.162 kb on + strand at 1939.312 kb on + strand, within Shewana3_1647 at 1939.394 kb on - strand, within Shewana3_1647 at 1939.409 kb on + strand, within Shewana3_1647 at 1939.422 kb on + strand, within Shewana3_1647 at 1939.465 kb on + strand, within Shewana3_1647 at 1939.500 kb on + strand at 1939.851 kb on + strand, within Shewana3_1648 at 1939.851 kb on + strand, within Shewana3_1648 at 1940.112 kb on - strand at 1940.926 kb on + strand, within Shewana3_1649 at 1941.033 kb on + strand, within Shewana3_1649 at 1941.048 kb on - strand, within Shewana3_1649 at 1941.136 kb on + strand, within Shewana3_1649 at 1941.141 kb on - strand, within Shewana3_1649 at 1941.371 kb on + strand at 1941.949 kb on + strand at 1941.965 kb on - strand at 1941.971 kb on + strand at 1942.137 kb on + strand at 1942.293 kb on + strand, within Shewana3_1651 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.423 kb on + strand, within Shewana3_1651
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,939,078 + -1.0 1,939,162 + +0.5 1,939,312 + Shewana3_1647 0.47 -1.5 1,939,394 - Shewana3_1647 0.69 -0.4 1,939,409 + Shewana3_1647 0.72 -1.0 1,939,422 + Shewana3_1647 0.76 -0.6 1,939,465 + Shewana3_1647 0.87 -0.0 1,939,500 + +0.5 1,939,851 + Shewana3_1648 0.83 -0.2 1,939,851 + Shewana3_1648 0.83 +0.5 1,940,112 - +0.1 1,940,926 + Shewana3_1649 0.61 +1.3 1,941,033 + Shewana3_1649 0.69 +0.8 1,941,048 - Shewana3_1649 0.70 +0.6 1,941,136 + Shewana3_1649 0.76 +0.8 1,941,141 - Shewana3_1649 0.76 +0.9 1,941,371 + +0.1 1,941,949 + -1.2 1,941,965 - +0.9 1,941,971 + +0.1 1,942,137 + +0.5 1,942,293 + Shewana3_1651 0.22 -1.6 1,942,293 + Shewana3_1651 0.22 +0.2 1,942,423 + Shewana3_1651 0.34 -0.1
Or see this region's nucleotide sequence