Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1399

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1398 and Shewana3_1399 are separated by 198 nucleotidesShewana3_1399 and Shewana3_1400 are separated by 0 nucleotidesShewana3_1400 and Shewana3_1401 are separated by 94 nucleotides Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313 _1398 Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141 _1399 Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876 _1400 Shewana3_1401: Shewana3_1401 - putative lipoprotein (RefSeq), at 1,616,971 to 1,617,351 _1401 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -2 -1 0 1at 1615.531 kb on + strandat 1615.599 kb on - strand, within Shewana3_1399at 1615.687 kb on + strand, within Shewana3_1399at 1615.701 kb on - strand, within Shewana3_1399at 1615.771 kb on - strand, within Shewana3_1399at 1616.074 kb on + strand, within Shewana3_1399at 1616.356 kb on + strand, within Shewana3_1400at 1616.709 kb on - strand, within Shewana3_1400at 1616.831 kb on + strandat 1616.955 kb on + strandat 1616.963 kb on - strandat 1617.028 kb on + strand, within Shewana3_1401at 1617.028 kb on + strand, within Shewana3_1401at 1617.036 kb on - strand, within Shewana3_1401

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,615,531 + +0.7
1,615,599 - Shewana3_1399 0.14 -0.7
1,615,687 + Shewana3_1399 0.28 +0.5
1,615,701 - Shewana3_1399 0.30 +0.8
1,615,771 - Shewana3_1399 0.41 +0.8
1,616,074 + Shewana3_1399 0.89 +0.7
1,616,356 + Shewana3_1400 0.29 +0.4
1,616,709 - Shewana3_1400 0.77 +0.5
1,616,831 + -0.9
1,616,955 + +0.3
1,616,963 - -2.3
1,617,028 + Shewana3_1401 0.15 +0.9
1,617,028 + Shewana3_1401 0.15 -1.2
1,617,036 - Shewana3_1401 0.17 -0.4

Or see this region's nucleotide sequence