Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1375

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1374 and Shewana3_1375 are separated by 650 nucleotidesShewana3_1375 and Shewana3_1376 are separated by 240 nucleotides Shewana3_1374: Shewana3_1374 - transcription antitermination protein nusG (RefSeq), at 1,587,769 to 1,588,269 _1374 Shewana3_1375: Shewana3_1375 - polysaccharide export protein (RefSeq), at 1,588,920 to 1,591,433 _1375 Shewana3_1376: Shewana3_1376 - lipopolysaccharide biosynthesis (RefSeq), at 1,591,674 to 1,592,630 _1376 Position (kb) 1588 1589 1590 1591 1592Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1587.952 kb on + strand, within Shewana3_1374at 1587.962 kb on + strand, within Shewana3_1374at 1587.972 kb on + strand, within Shewana3_1374at 1588.054 kb on + strand, within Shewana3_1374at 1588.256 kb on - strandat 1588.430 kb on - strandat 1588.505 kb on + strandat 1588.727 kb on + strandat 1588.735 kb on - strandat 1588.857 kb on + strandat 1589.444 kb on + strand, within Shewana3_1375at 1591.532 kb on - strandat 1591.572 kb on - strandat 1591.737 kb on + strandat 1592.210 kb on - strand, within Shewana3_1376

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,587,952 + Shewana3_1374 0.37 -2.1
1,587,962 + Shewana3_1374 0.39 -1.3
1,587,972 + Shewana3_1374 0.41 -3.1
1,588,054 + Shewana3_1374 0.57 -1.0
1,588,256 - -2.8
1,588,430 - -1.9
1,588,505 + +0.4
1,588,727 + +0.2
1,588,735 - -3.2
1,588,857 + +1.6
1,589,444 + Shewana3_1375 0.21 -4.8
1,591,532 - +0.7
1,591,572 - +0.7
1,591,737 + -2.5
1,592,210 - Shewana3_1376 0.56 -5.2

Or see this region's nucleotide sequence