Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1281

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1280 and Shewana3_1281 overlap by 4 nucleotidesShewana3_1281 and Shewana3_1282 overlap by 4 nucleotides Shewana3_1280: Shewana3_1280 - conjugal transfer coupling protein TraG (RefSeq), at 1,491,078 to 1,493,075 _1280 Shewana3_1281: Shewana3_1281 - CopG/DNA-binding domain-containing protein (RefSeq), at 1,493,072 to 1,493,536 _1281 Shewana3_1282: Shewana3_1282 - type II secretion system protein E (RefSeq), at 1,493,533 to 1,494,603 _1282 Position (kb) 1493 1494Strain fitness (log2 ratio) -2 -1 0 1at 1492.396 kb on + strand, within Shewana3_1280at 1492.404 kb on - strand, within Shewana3_1280at 1492.442 kb on + strand, within Shewana3_1280at 1492.852 kb on - strand, within Shewana3_1280at 1492.959 kb on - strandat 1493.016 kb on + strandat 1493.380 kb on + strand, within Shewana3_1281at 1493.444 kb on - strand, within Shewana3_1281at 1493.494 kb on - strandat 1493.532 kb on + strandat 1493.532 kb on + strandat 1493.532 kb on + strandat 1493.540 kb on - strandat 1493.658 kb on - strand, within Shewana3_1282at 1493.681 kb on - strand, within Shewana3_1282at 1493.740 kb on - strand, within Shewana3_1282at 1493.790 kb on - strand, within Shewana3_1282at 1493.927 kb on + strand, within Shewana3_1282at 1493.941 kb on - strand, within Shewana3_1282at 1494.051 kb on + strand, within Shewana3_1282at 1494.423 kb on + strand, within Shewana3_1282at 1494.481 kb on - strand, within Shewana3_1282

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,492,396 + Shewana3_1280 0.66 +0.6
1,492,404 - Shewana3_1280 0.66 -1.1
1,492,442 + Shewana3_1280 0.68 -1.4
1,492,852 - Shewana3_1280 0.89 +0.5
1,492,959 - +0.0
1,493,016 + -2.6
1,493,380 + Shewana3_1281 0.66 -0.8
1,493,444 - Shewana3_1281 0.80 +0.2
1,493,494 - -1.6
1,493,532 + -0.9
1,493,532 + -0.3
1,493,532 + +0.3
1,493,540 - -0.1
1,493,658 - Shewana3_1282 0.12 +0.2
1,493,681 - Shewana3_1282 0.14 -1.2
1,493,740 - Shewana3_1282 0.19 +0.3
1,493,790 - Shewana3_1282 0.24 -1.5
1,493,927 + Shewana3_1282 0.37 +0.3
1,493,941 - Shewana3_1282 0.38 -1.3
1,494,051 + Shewana3_1282 0.48 -0.8
1,494,423 + Shewana3_1282 0.83 +0.1
1,494,481 - Shewana3_1282 0.89 -1.7

Or see this region's nucleotide sequence