Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1186

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1185 and Shewana3_1186 are separated by 418 nucleotidesShewana3_1186 and Shewana3_1187 are separated by 622 nucleotides Shewana3_1185: Shewana3_1185 - hypothetical protein (RefSeq), at 1,392,020 to 1,392,841 _1185 Shewana3_1186: Shewana3_1186 - LysR family transcriptional regulator (RefSeq), at 1,393,260 to 1,394,201 _1186 Shewana3_1187: Shewana3_1187 - hypothetical protein (RefSeq), at 1,394,824 to 1,396,671 _1187 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1392.352 kb on + strand, within Shewana3_1185at 1392.464 kb on - strand, within Shewana3_1185at 1392.626 kb on + strand, within Shewana3_1185at 1392.862 kb on + strandat 1392.871 kb on + strandat 1392.949 kb on - strandat 1392.990 kb on + strandat 1393.111 kb on - strandat 1393.222 kb on + strandat 1393.243 kb on + strandat 1393.271 kb on + strandat 1393.279 kb on - strandat 1393.326 kb on + strandat 1393.336 kb on + strandat 1393.404 kb on - strand, within Shewana3_1186at 1393.426 kb on + strand, within Shewana3_1186at 1393.434 kb on - strand, within Shewana3_1186at 1393.514 kb on - strand, within Shewana3_1186at 1393.662 kb on - strand, within Shewana3_1186at 1393.674 kb on + strand, within Shewana3_1186at 1393.674 kb on + strand, within Shewana3_1186at 1393.924 kb on - strand, within Shewana3_1186at 1394.028 kb on - strand, within Shewana3_1186at 1394.101 kb on + strand, within Shewana3_1186at 1394.614 kb on + strandat 1394.876 kb on + strandat 1394.876 kb on + strandat 1394.884 kb on - strandat 1395.093 kb on - strand, within Shewana3_1187at 1395.185 kb on + strand, within Shewana3_1187at 1395.200 kb on - strand, within Shewana3_1187

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
1,392,352 + Shewana3_1185 0.40 -1.5
1,392,464 - Shewana3_1185 0.54 +0.1
1,392,626 + Shewana3_1185 0.74 -0.1
1,392,862 + +0.6
1,392,871 + +0.8
1,392,949 - +0.7
1,392,990 + +0.4
1,393,111 - +0.5
1,393,222 + +0.1
1,393,243 + +0.0
1,393,271 + -1.2
1,393,279 - -1.7
1,393,326 + -0.5
1,393,336 + -0.3
1,393,404 - Shewana3_1186 0.15 -2.2
1,393,426 + Shewana3_1186 0.18 -2.0
1,393,434 - Shewana3_1186 0.18 -1.8
1,393,514 - Shewana3_1186 0.27 -5.0
1,393,662 - Shewana3_1186 0.43 -0.3
1,393,674 + Shewana3_1186 0.44 -0.2
1,393,674 + Shewana3_1186 0.44 -2.0
1,393,924 - Shewana3_1186 0.70 +1.2
1,394,028 - Shewana3_1186 0.82 -0.4
1,394,101 + Shewana3_1186 0.89 -0.4
1,394,614 + -0.2
1,394,876 + +0.1
1,394,876 + +0.7
1,394,884 - -2.2
1,395,093 - Shewana3_1187 0.15 -1.2
1,395,185 + Shewana3_1187 0.20 -1.0
1,395,200 - Shewana3_1187 0.20 -1.0

Or see this region's nucleotide sequence