Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1155 and Shewana3_1156 are separated by 390 nucleotides Shewana3_1156 and Shewana3_1157 are separated by 315 nucleotides Shewana3_1157 and Shewana3_1158 are separated by 103 nucleotides
Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571
_1155
Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533
_1156
Shewana3_1157: Shewana3_1157 - hypothetical protein (RefSeq), at 1,364,849 to 1,365,073
_1157
Shewana3_1158: Shewana3_1158 - TetR family transcriptional regulator (RefSeq), at 1,365,177 to 1,365,758
_1158
Position (kb)
1362
1363
1364
1365 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1362.020 kb on - strand, within Shewana3_1155 at 1362.266 kb on - strand, within Shewana3_1155 at 1362.271 kb on + strand, within Shewana3_1155 at 1362.279 kb on - strand, within Shewana3_1155 at 1362.395 kb on + strand, within Shewana3_1155 at 1362.440 kb on + strand, within Shewana3_1155 at 1362.559 kb on - strand at 1362.712 kb on - strand at 1362.744 kb on - strand at 1362.773 kb on + strand at 1362.781 kb on - strand at 1362.931 kb on + strand at 1362.931 kb on + strand at 1362.939 kb on - strand at 1363.015 kb on - strand at 1363.045 kb on + strand at 1363.106 kb on + strand at 1363.229 kb on - strand, within Shewana3_1156 at 1363.313 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156 at 1363.621 kb on - strand, within Shewana3_1156 at 1363.977 kb on - strand, within Shewana3_1156 at 1363.977 kb on - strand, within Shewana3_1156 at 1364.015 kb on + strand, within Shewana3_1156 at 1364.022 kb on + strand, within Shewana3_1156 at 1364.030 kb on - strand, within Shewana3_1156 at 1364.030 kb on - strand, within Shewana3_1156 at 1364.030 kb on - strand, within Shewana3_1156 at 1364.180 kb on + strand, within Shewana3_1156 at 1364.230 kb on - strand, within Shewana3_1156 at 1364.230 kb on - strand, within Shewana3_1156 at 1364.252 kb on + strand, within Shewana3_1156 at 1364.260 kb on - strand, within Shewana3_1156 at 1364.412 kb on - strand at 1364.783 kb on + strand at 1364.931 kb on - strand, within Shewana3_1157 at 1365.004 kb on + strand, within Shewana3_1157 at 1365.012 kb on - strand, within Shewana3_1157 at 1365.058 kb on + strand at 1365.058 kb on + strand at 1365.066 kb on - strand at 1365.261 kb on - strand, within Shewana3_1158 at 1365.323 kb on - strand, within Shewana3_1158
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,362,020 - Shewana3_1155 0.24 -1.5 1,362,266 - Shewana3_1155 0.58 -1.8 1,362,271 + Shewana3_1155 0.58 -0.1 1,362,279 - Shewana3_1155 0.59 -2.1 1,362,395 + Shewana3_1155 0.76 -0.2 1,362,440 + Shewana3_1155 0.82 +0.5 1,362,559 - -1.7 1,362,712 - +0.5 1,362,744 - -0.8 1,362,773 + -0.6 1,362,781 - +0.5 1,362,931 + -1.2 1,362,931 + +0.4 1,362,939 - -0.7 1,363,015 - +0.2 1,363,045 + +0.4 1,363,106 + -1.2 1,363,229 - Shewana3_1156 0.17 +0.8 1,363,313 + Shewana3_1156 0.22 -0.2 1,363,523 + Shewana3_1156 0.36 -0.3 1,363,523 + Shewana3_1156 0.36 +0.1 1,363,621 - Shewana3_1156 0.42 -0.1 1,363,977 - Shewana3_1156 0.65 +0.7 1,363,977 - Shewana3_1156 0.65 -0.4 1,364,015 + Shewana3_1156 0.67 +1.0 1,364,022 + Shewana3_1156 0.67 -1.0 1,364,030 - Shewana3_1156 0.68 +0.4 1,364,030 - Shewana3_1156 0.68 -1.0 1,364,030 - Shewana3_1156 0.68 -0.0 1,364,180 + Shewana3_1156 0.77 -0.3 1,364,230 - Shewana3_1156 0.81 -0.2 1,364,230 - Shewana3_1156 0.81 +0.6 1,364,252 + Shewana3_1156 0.82 +0.5 1,364,260 - Shewana3_1156 0.83 -0.2 1,364,412 - +0.4 1,364,783 + +0.3 1,364,931 - Shewana3_1157 0.36 -1.0 1,365,004 + Shewana3_1157 0.69 +0.7 1,365,012 - Shewana3_1157 0.72 +0.8 1,365,058 + -0.1 1,365,058 + -1.9 1,365,066 - +0.0 1,365,261 - Shewana3_1158 0.14 -2.7 1,365,323 - Shewana3_1158 0.25 -3.2
Or see this region's nucleotide sequence