Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1156

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1155 and Shewana3_1156 are separated by 390 nucleotidesShewana3_1156 and Shewana3_1157 are separated by 315 nucleotidesShewana3_1157 and Shewana3_1158 are separated by 103 nucleotides Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571 _1155 Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533 _1156 Shewana3_1157: Shewana3_1157 - hypothetical protein (RefSeq), at 1,364,849 to 1,365,073 _1157 Shewana3_1158: Shewana3_1158 - TetR family transcriptional regulator (RefSeq), at 1,365,177 to 1,365,758 _1158 Position (kb) 1362 1363 1364 1365Strain fitness (log2 ratio) -3 -2 -1 0 1at 1362.020 kb on - strand, within Shewana3_1155at 1362.266 kb on - strand, within Shewana3_1155at 1362.271 kb on + strand, within Shewana3_1155at 1362.279 kb on - strand, within Shewana3_1155at 1362.395 kb on + strand, within Shewana3_1155at 1362.440 kb on + strand, within Shewana3_1155at 1362.559 kb on - strandat 1362.712 kb on - strandat 1362.744 kb on - strandat 1362.773 kb on + strandat 1362.781 kb on - strandat 1362.931 kb on + strandat 1362.931 kb on + strandat 1362.939 kb on - strandat 1363.015 kb on - strandat 1363.045 kb on + strandat 1363.106 kb on + strandat 1363.229 kb on - strand, within Shewana3_1156at 1363.313 kb on + strand, within Shewana3_1156at 1363.523 kb on + strand, within Shewana3_1156at 1363.523 kb on + strand, within Shewana3_1156at 1363.621 kb on - strand, within Shewana3_1156at 1363.977 kb on - strand, within Shewana3_1156at 1363.977 kb on - strand, within Shewana3_1156at 1364.015 kb on + strand, within Shewana3_1156at 1364.022 kb on + strand, within Shewana3_1156at 1364.030 kb on - strand, within Shewana3_1156at 1364.030 kb on - strand, within Shewana3_1156at 1364.030 kb on - strand, within Shewana3_1156at 1364.180 kb on + strand, within Shewana3_1156at 1364.230 kb on - strand, within Shewana3_1156at 1364.230 kb on - strand, within Shewana3_1156at 1364.252 kb on + strand, within Shewana3_1156at 1364.260 kb on - strand, within Shewana3_1156at 1364.412 kb on - strandat 1364.783 kb on + strandat 1364.931 kb on - strand, within Shewana3_1157at 1365.004 kb on + strand, within Shewana3_1157at 1365.012 kb on - strand, within Shewana3_1157at 1365.058 kb on + strandat 1365.058 kb on + strandat 1365.066 kb on - strandat 1365.261 kb on - strand, within Shewana3_1158at 1365.323 kb on - strand, within Shewana3_1158

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
1,362,020 - Shewana3_1155 0.24 -1.5
1,362,266 - Shewana3_1155 0.58 -1.8
1,362,271 + Shewana3_1155 0.58 -0.1
1,362,279 - Shewana3_1155 0.59 -2.1
1,362,395 + Shewana3_1155 0.76 -0.2
1,362,440 + Shewana3_1155 0.82 +0.5
1,362,559 - -1.7
1,362,712 - +0.5
1,362,744 - -0.8
1,362,773 + -0.6
1,362,781 - +0.5
1,362,931 + -1.2
1,362,931 + +0.4
1,362,939 - -0.7
1,363,015 - +0.2
1,363,045 + +0.4
1,363,106 + -1.2
1,363,229 - Shewana3_1156 0.17 +0.8
1,363,313 + Shewana3_1156 0.22 -0.2
1,363,523 + Shewana3_1156 0.36 -0.3
1,363,523 + Shewana3_1156 0.36 +0.1
1,363,621 - Shewana3_1156 0.42 -0.1
1,363,977 - Shewana3_1156 0.65 +0.7
1,363,977 - Shewana3_1156 0.65 -0.4
1,364,015 + Shewana3_1156 0.67 +1.0
1,364,022 + Shewana3_1156 0.67 -1.0
1,364,030 - Shewana3_1156 0.68 +0.4
1,364,030 - Shewana3_1156 0.68 -1.0
1,364,030 - Shewana3_1156 0.68 -0.0
1,364,180 + Shewana3_1156 0.77 -0.3
1,364,230 - Shewana3_1156 0.81 -0.2
1,364,230 - Shewana3_1156 0.81 +0.6
1,364,252 + Shewana3_1156 0.82 +0.5
1,364,260 - Shewana3_1156 0.83 -0.2
1,364,412 - +0.4
1,364,783 + +0.3
1,364,931 - Shewana3_1157 0.36 -1.0
1,365,004 + Shewana3_1157 0.69 +0.7
1,365,012 - Shewana3_1157 0.72 +0.8
1,365,058 + -0.1
1,365,058 + -1.9
1,365,066 - +0.0
1,365,261 - Shewana3_1158 0.14 -2.7
1,365,323 - Shewana3_1158 0.25 -3.2

Or see this region's nucleotide sequence